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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.13G090000.1.p |
| Common Name | GLYMA_13G090000, LOC100795704 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
C2H2 |
| Protein Properties |
Length: 238aa MW: 26902.4 Da PI: 9.5625 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.13G090000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 21.2 | 7.8e-07 | 92 | 111 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++Cp C+k+F+r nL+ H+
Glyma.13G090000.1.p 92 FSCPVCHKTFNRYNNLQMHM 111
89*****************9 PP
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| 2 | zf-C2H2 | 12.1 | 0.0006 | 176 | 198 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C +Cgk+ k + ++H +++
Glyma.13G090000.1.p 176 FTCRKCGKPLAVKGDWRTHEKNC 198
89*****************9987 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 238 aa
Download sequence Send
to blast |
MNQNQLQPLP LLSSFLGSSH EESLLQNQNE NPNNACHGQV EDVTVALHIG LPDHSSGSNS 60
TNNHGFVNAT TQVPNNYWIP TQEQILIGFS HFSCPVCHKT FNRYNNLQMH MWGHGSQYRR 120
GPDSLKRTHP RPLLDLPCYC CARGCKNNIE HARAKPLKDF RTLQTHYKRK HGSKPFTCRK 180
CGKPLAVKGD WRTHEKNCGK RWLCICGSDF KHKRSLKDHI KAFGFGHTPF SSSSDGM*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Developing ovules and young seeds. {ECO:0000269|PubMed:11782451}. |
| Uniprot | TISSUE SPECIFICITY: Restricted to the endothelium, the innermost cell layer of the seed coat and detected to a lesser extent in the other cell layers of the testa. {ECO:0000269|PubMed:11782451}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AJ311808 | 0.0 | AJ311808.1 Glycine max partial mRNA for WIP1 protein (WIP1 gene). |
