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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.13G088100.1.p |
| Common Name | GLYMA_13G088100, LOC100802961 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
ERF |
| Protein Properties |
Length: 312aa MW: 34052.2 Da PI: 6.3679 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.13G088100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 65.4 | 1.1e-20 | 137 | 186 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ +l+g
Glyma.13G088100.1.p 137 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYRLRG 186
59******9.**********965...5*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MAATMNFYNE TSQQVQSDPF RGELMEVLEP FMKTCPSSTP SILSSDSPSP SSYSPLLPPH 60
PSFSTYTPSA YLFQNQQPLI GFEQQPSSLL GLNHLSTSQI SQIQAQAQAQ NSLSLNFLGP 120
KPVPMKHVGG PAKPTKLYRG VRQRHWGKWV AEIRLPKNRT RLWLGTFDTA EEAALAYDKA 180
AYRLRGDLAR LNFPNLKGSC PGEEYKPMQA AVDAKLDAIC ANLAEMQKQG KNEKGARSGK 240
KSKQGPNLEA KPEPEASGSG AAALSPESEG SADSSALSDL TFDVTEPQWE DASAHFNLQK 300
FPSYEIDWDS L*
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| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Gma.59056 | 0.0 | cotyledon| leaf| root| seed coat| somatic embryo| stem |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015036 | 7e-38 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
| Publications
? help Back to Top |
- Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
XcisClique: analysis of regulatory bicliques.
BMC Bioinformatics, 2006. 7: p. 218
[PMID:16630346] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Iwase A, et al.
WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
J. Plant Res., 2015. 128(3): p. 389-97
[PMID:25810222] - Ikeuchi M, et al.
PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
Nat Plants, 2015. 1: p. 15089
[PMID:27250255] - Iwase A, et al.
WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
Plant Cell, 2017. 29(1): p. 54-69
[PMID:28011694]
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