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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Glyma.13G064000.1.p |
| Common Name | GLYMA_13G064000, LOC100790803 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 292aa MW: 33146.1 Da PI: 7.7492 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.13G064000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.8 | 4.5e-19 | 92 | 145 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+ ++++eq++ Le+ Fe +++ e++ +LAk lgL+ rq+++WFqNrRa++k
Glyma.13G064000.1.p 92 KKKRLSQEQVKGLEKSFELGNKLEPERKMQLAKALGLQPRQISIWFQNRRARWK 145
45679************************************************9 PP
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| 2 | HD-ZIP_I/II | 126.5 | 1.2e-40 | 91 | 183 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
ekk+rls+eqvk LE+sFe +kLeperK++la++Lglqprq+ +WFqnrRAR+ktkqlEk+ye+Lk+ ++a+k++n++L++++++L++e
Glyma.13G064000.1.p 91 EKKKRLSQEQVKGLEKSFELGNKLEPERKMQLAKALGLQPRQISIWFQNRRARWKTKQLEKEYEVLKKLFEAVKADNDSLKAQNQKLHAE 180
69***************************************************************************************9 PP
HD-ZIP_I/II 91 lke 93
l++
Glyma.13G064000.1.p 181 LQT 183
986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 292 aa
Download sequence Send
to blast |
MAFPPSHTFM FQTHEDHDPH QLHLRSTSTS LNAFPSFPPH HFQGGGAGAG GFMMKRSMSF 60
SSIEKNNHKN KCDEVHGDDE LSDEGSQLLG EKKKRLSQEQ VKGLEKSFEL GNKLEPERKM 120
QLAKALGLQP RQISIWFQNR RARWKTKQLE KEYEVLKKLF EAVKADNDSL KAQNQKLHAE 180
LQTLKSRDCS ETGTVISLKK ETEGSWSNGS NNSSEINLDL SRTPVMNSPV SSSLNGKTLL 240
PTSLKPTSIT QLLQCSSRSD LQDESFCNMF HNIDEQQNFW PWPDHQQHQF H*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 139 | 147 | RRARWKTKQ |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed predominantly in flowers, and in the cortex of the root and the stem. {ECO:0000269|PubMed:16055682}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
