PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G063300.1.p
Common NameGLYMA_13G063300, LOC100777630
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 381aa    MW: 43347 Da    PI: 7.8844
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G063300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.75.5e-54131382128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          +pGfrFhPtdeelv++yLk+k+++k+l++ e ik+vdiyk++PwdLpk + ++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++
  Glyma.13G063300.1.p  13 MPGFRFHPTDEELVDFYLKRKIQQKSLPI-ELIKQVDIYKYDPWDLPKLAGTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRP 101
                          79***************************.89***************9888999************************************ PP

                  NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++s++g+ +glkk+Lvfy+gra kg ktdW+mhe+rl
  Glyma.13G063300.1.p 102 IYSSEGKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRL 138
                          ***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-5711169IPR003441NAC domain
PROSITE profilePS5100556.212169IPR003441NAC domain
PfamPF023654.4E-2614138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MERNEMERID DVMPGFRFHP TDEELVDFYL KRKIQQKSLP IELIKQVDIY KYDPWDLPKL  60
AGTGEKEWYF YCPRDRKYRN SARPNRVTRA GFWKATGTDR PIYSSEGKCI GLKKSLVFYR  120
GRAAKGMKTD WMMHEFRLPC ISDSSPPKKL SDRSLPPNDS WAICRIFKKT NSLSLAQKAL  180
SLPLISQLPG GIVSDMFTQG LKCHNIGSPA IQFCGDKQDE LHQVSNNAIN NNFSASDIPT  240
YKLINNSTVS KPSPQSPVSD GDLADNFIFY SSWPTKCCTL DPTSMLSPNP DYIEFEDPNQ  300
QHYSGFSINL PQDMKQNMST ETGTKEQDHQ WETTIGMRTT GYPFSLSPPY DAWKASSVAW  360
ESRPCPSDMS TTYSTNKCYT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-531417217171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G063300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-112AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014621473.10.0protein FEZ
RefseqXP_028197111.10.0protein FEZ-like
TrEMBLA0A445HBZ00.0A0A445HBZ0_GLYSO; Putative NAC domain-containing protein 94
TrEMBLK7LXH40.0K7LXH4_SOYBN; Uncharacterized protein
STRINGGLYMA13G05350.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.12e-95NAC domain containing protein 94