PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G063100.1.p
Common NameGLYMA_13G063100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 83aa    MW: 9035.2 Da    PI: 9.0966
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G063100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.82e-311875258
          ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                         ++v+Y eC+kNhAa++Gg+avDGC+Efm+s  +  gt+aal+CaACgCHRnFH+r+++
  Glyma.13G063100.1.p 18 RTVKYGECQKNHAANVGGYAVDGCREFMASGATGeGTSAALTCAACGCHRNFHKRQET 75
                         579**************************9766679******************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-171678IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.2E-292074IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.8E-252173IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.4662273IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MRKRQVVVRR EEPQRSARTV KYGECQKNHA ANVGGYAVDG CREFMASGAT GEGTSAALTC  60
AACGCHRNFH KRQETEVVNH II*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.223561e-131epicotyl| flower| hypocotyl| pod| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in stems, flowers and siliques, and, to a lower extent, in inflorescence. {ECO:0000269|PubMed:16412086}.
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269|PubMed:21455630}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G063100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0894611e-128BT089461.1 Soybean clone JCVI-FLGm-2C17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006593674.12e-51mini zinc finger protein 2
RefseqXP_028196434.12e-51mini zinc finger protein 2-like
SwissprotQ9LJW52e-30MIF2_ARATH; Mini zinc finger protein 2
TrEMBLI1LWK32e-53I1LWK3_SOYBN; Uncharacterized protein
STRINGGLYMA13G05380.26e-51(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF155034100
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.17e-25mini zinc finger 2
Publications ? help Back to Top
  1. Bollier N, et al.
    At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato.
    Plant Cell, 2018. 30(1): p. 83-100
    [PMID:29298836]