PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G061900.3.p
Common NameGLYMA_13G061900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 401aa    MW: 43876.5 Da    PI: 6.5105
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G061900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.1e-174590148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  Glyma.13G061900.3.p 45 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 90
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.031239IPR017877Myb-like domain
SuperFamilySSF466897.94E-212599IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.8E-112552IPR009057Homeodomain-like
PROSITE profilePS5129425.8914094IPR017930Myb domain
SMARTSM007171.2E-164492IPR001005SANT/Myb domain
PfamPF002494.8E-164590IPR001005SANT/Myb domain
CDDcd001671.97E-114790No hitNo description
Gene3DG3DSA:1.10.10.604.6E-225391IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MKLLQCSVHV VKWRCLCCCV YIGLQRCGKS CRLRWTNYLR PDIKRGKFSL QEEQTIIQLH  60
ALLGNRWSAI ATHLPKRTDN EIKNYWNTHL KKRLTKMGID PVTHKPKNDA LLSSDGQSKT  120
AANLSHMAQW ESARLEAEAR LVRESKIRSH SLQQQFGSSS STFASSSSAS TSASALNNNS  180
NNKPEAPPPP PPPPPPSPPP SRSSLDVLKA WNSGGWLKSN EGSGAIASNV GVSGDLESPT  240
STLSFSENAP PIMNGIRGEN NNNNKNDSAM PMIEFVRISG NSSSLVKEEG EQEWKGTYDS  300
SITTFSSSLH EFTMNMEGTW ASESLRTSGS HDDDIVEEGF TNLLLKTNSE DPNLSSEGGG  360
QSNNDDGGDG SNNDFYEDNN NYWNSILNLV NSSPSHPPMF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-17269440108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.350390.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G061900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0936130.0BT093613.1 Soybean clone JCVI-FLGm-24C14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543812.10.0transcription factor MYB106
RefseqXP_028196412.10.0transcription factor MYB106-like
TrEMBLA0A0R0GVQ30.0A0A0R0GVQ3_SOYBN; Uncharacterized protein
STRINGGLYMA13G05550.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.16e-76myb domain protein 106