PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G060600.1.p
Common NameGLYMA_13G060600, LOC100786711
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 413aa    MW: 46368.3 Da    PI: 4.4224
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G060600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.6e-194291255
                  AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Glyma.13G060600.1.p 42 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 91
                         789******.7*********33....35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.94E-324198No hitNo description
SuperFamilySSF541713.6E-194299IPR016177DNA-binding domain
PROSITE profilePS5103219.5994299IPR001471AP2/ERF domain
PfamPF008471.3E-134291IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-274298IPR001471AP2/ERF domain
SMARTSM003803.3E-3642105IPR001471AP2/ERF domain
PRINTSPR003676.1E-84354IPR001471AP2/ERF domain
PRINTSPR003676.1E-86581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MARKRKVAEV VEERDLCEGT LGWDEMMKQA AALGGVQRAR KRFVGVRQRP SGRWVAEIKD  60
TIQKIRVWLG TFDTAEEAAR AYDEAACLLR GTNTRTNFWP CSQSSTSPAL SSKITNLLLQ  120
RLKERNNNNT CSSSSSSSTS LLINHQQMHQ QVGAYGEGST QFSIDQFTDF LNDPEDYSTS  180
NNDFINNSAQ IDYITSSFES CLTEKDGGTK IDMQYKSRNV TPQTSSNDSN SGVEDSEEEG  240
SDLGVQSTNL DVHDFKFLDN IAPPSYYSPF EMAEEMEEEP VEPENENYGD EPSMLRAVMK  300
RMTYERKFSA SLYAFNGIPE CLKLKLESGN MKGRGLADQL TSLQMACSKN ILEKNKEEKE  360
YIGTMDRRQE EEHQQTSPDM DSSSVDGELL LWNSLDLPPI CFVNLLENGS FN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-133598771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G060600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543860.10.0ethylene-responsive transcription factor ERN2
RefseqXP_028197038.10.0ethylene-responsive transcription factor ERN2-like
TrEMBLA0A445HBW00.0A0A445HBW0_GLYSO; Ethylene-responsive transcription factor ERN1
TrEMBLK7LXI90.0K7LXI9_SOYBN; Uncharacterized protein
STRINGGLYMA13G05690.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-23related to AP2 11