PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G058500.1.p
Common NameGLYMA_13G058500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 307aa    MW: 35089.8 Da    PI: 8.5846
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G058500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.13.2e-1322107899
                          -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                            +l++g+l lpk+f++++g +   s  + l+ ++g +W++    +k +g+++++kGWke++    L+ g  ++F+++g+s f   v++f
  Glyma.13G058500.1.p  22 RTSLAHGILKLPKDFTTKYGDS--MSNLVFLNPPDGIEWKICW--TKLDGKIWFEKGWKEYATYYSLDHGHLLLFQYQGTSHF--DVHIF 105
                          56788999***********877..566788888*******999..*********************************99999..99999 PP

                          -S CS
                   B3  98 rk 99 
                          ++
  Glyma.13G058500.1.p 106 DN 107
                          87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.08E-2013108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-1914108IPR015300DNA-binding pseudobarrel domain
CDDcd100177.21E-1215106No hitNo description
PROSITE profilePS5086311.81515108IPR003340B3 DNA binding domain
SMARTSM010191.1E-1016108IPR003340B3 DNA binding domain
PfamPF023622.3E-1023107IPR003340B3 DNA binding domain
PROSITE profilePS508636.64234272IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-5234268IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-6235267IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MTSSHNKHPL PTAVHFFKII LRTSLAHGIL KLPKDFTTKY GDSMSNLVFL NPPDGIEWKI  60
CWTKLDGKIW FEKGWKEYAT YYSLDHGHLL LFQYQGTSHF DVHIFDNSAI EVDYPSSPGT  120
RDGKERHVEI SDDSVEILDA QFSCQKTRVK STVPSPQPSK EMKFGPTTNV ERSPRVNLHQ  180
HVQTGSTSSQ VKNYEARKEE GKGIFNTECP KVEQLTSTTL KKATTFRLVM KPSFINGEYL  240
KFASENNLNV GDVCVFELIQ SFAFKVQRDQ VSPFHKPIQL EWERFQNEVK EDILKRNLGT  300
KNTEKG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.2403e-64leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO162836573e-64
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G058500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014621699.10.0B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A0R0GJ230.0A0A0R0GJ23_SOYBN; Uncharacterized protein
STRINGGLYMA13G05926.11e-149(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.19e-24B3 family protein