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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G047400.1.p | ||||||||
Common Name | GLYMA_13G047400, LOC100801549 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TCP | ||||||||
Protein Properties | Length: 420aa MW: 46564.1 Da PI: 9.5194 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 147.9 | 6.7e-46 | 102 | 273 | 2 | 135 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec.eaess 78 ++kkdrhski+T++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t+eWL++++k+aikel+++ s+ss+s+c + + Glyma.13G047400.1.p 102 PPKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKRAIKELARSkhsnnnsdegakSFSSSSDCeDGCEV 191 78**************************************************************99999999999888888889533344 PP TCP 79 sssasnsssg.............................kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 +s+ ++++++ aak+ +k k+ +++ +++kesr+karararert++k + n+ Glyma.13G047400.1.p 192 VSEIKHKQQQlitcdaaattphnlqqgldsgdnkspttlMAAKERMKLKR----TQKEPAKMKESREKARARARERTSNKIIMCNV 273 444444444477799999999999999****9876544333333333333....333456899****************9766554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 35.921 | 104 | 162 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.8E-45 | 104 | 268 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51370 | 11.607 | 250 | 267 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048831 | Biological Process | regulation of shoot system development |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MFPYSSNPSP SFPSSSSSYP PFPFLNLENA SASNTLLHDA LSVPYIPTHH NPSSIQEALN 60 NFPVTDHNCG GGGGSGSAMT KPDPNGGGAP QYGISCFLTK KPPKKDRHSK IYTSQGLRDR 120 RVRLSIEIAR KFFDLQDMLG FDKASNTLEW LFNKSKRAIK ELARSKHSNN NSDEGAKSFS 180 SSSDCEDGCE VVSEIKHKQQ QLITCDAAAT TPHNLQQGLD SGDNKSPTTL MAAKERMKLK 240 RTQKEPAKMK ESREKARARA RERTSNKIIM CNVNTNNTGG KVLQDLKKKC PAIENNHTQI 300 MHQSRSSPTH HPHHLVGNET PRDDFNVIEE SIVIKRKLKP SLMSSSDHHH HHHQNLVMPK 360 EPPSFNNNNS EYHPFSNLSP NWDANGSTGR SNFCAIASMN LSTGLQIFGK SWEECINPR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G047400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541273.1 | 0.0 | transcription factor CYCLOIDEA | ||||
Refseq | XP_006593723.1 | 0.0 | transcription factor CYCLOIDEA | ||||
Refseq | XP_014620978.1 | 0.0 | transcription factor CYCLOIDEA | ||||
Refseq | XP_028197082.1 | 0.0 | transcription factor CYCLOIDEA-like | ||||
Refseq | XP_028197083.1 | 0.0 | transcription factor CYCLOIDEA-like | ||||
TrEMBL | A0A445HB77 | 0.0 | A0A445HB77_GLYSO; Transcription factor TCP1 | ||||
TrEMBL | K7LXS7 | 0.0 | K7LXS7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G07475.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 2e-29 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G047400.1.p |
Entrez Gene | 100801549 |
Publications ? help Back to Top | |||
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