PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G040400.1.p
Common NameGLYMA_13G040400, LOC100801199
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 336aa    MW: 38536.6 Da    PI: 5.2445
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G040400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-18106156155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++++GVr+++ +g+W+AeIrdp++   r r++lg+f taeeAa  +++a+  l+g
  Glyma.13G040400.1.p 106 KKFRGVRQRP-WGKWAAEIRDPVQ---RVRIWLGTFETAEEAALCYDNAAIMLRG 156
                          59********.**********755...5***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.79E-32106163No hitNo description
PROSITE profilePS5103222.813107164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-29107163IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-21107165IPR016177DNA-binding domain
SMARTSM003806.4E-37107170IPR001471AP2/ERF domain
PfamPF008471.3E-11107156IPR001471AP2/ERF domain
PRINTSPR003671.6E-10108119IPR001471AP2/ERF domain
PRINTSPR003671.6E-10130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEPQNRSNSI LCKYTEHETV TKKHMKSKNN TSLSPKVISI LMTDQYATDS SSDEERVTSR  60
RRIKRYVNRI ELQPAIKSVA TRKRHVGDAT KLRPPQVKVK NSGSVKKFRG VRQRPWGKWA  120
AEIRDPVQRV RIWLGTFETA EEAALCYDNA AIMLRGPDAL TNFGIRSKET LEKEERKELD  180
EKEEIRTEKP EMKVVVKPEI ETALVSCFYD SADEFCLNLS SPTSVLRFNE SAELEKQYEP  240
FPGRTEAHTV LEECQGQTVS FHESSEFMLQ DMPWDDVFNF PVMFDEPVSH LFDETTRFSS  300
SEVFSEEKFL PSATLCQVDD YFQDILLGSD PLVAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22106166465ATERF1
3gcc_A2e-22106166465ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G040400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006593759.10.0ethylene-responsive transcription factor CRF3
RefseqXP_028196826.10.0ethylene-responsive transcription factor CRF3
TrEMBLA0A445HAW30.0A0A445HAW3_GLYSO; Ethylene-responsive transcription factor CRF4
TrEMBLI1LX810.0I1LX81_SOYBN; Uncharacterized protein
STRINGGLYMA13G08490.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-51cytokinin response factor 4