PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 327aa MW: 36467.2 Da PI: 5.6253

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G038500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.6	3.4e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W teEde+lv +v+++G+g+W++++++ g+ R++k+c++rw +yl Glyma.13G038500.1.p 14 KGPWKTEEDEKLVAYVERHGPGNWRSVPAKAGLQRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	50.3	5.7e-16	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ eE+ +v+++ +lG++ W+ Ia++++ +Rt++++k++w++ Glyma.13G038500.1.p 67 RGSFSLEEHRTIVQLHSLLGNK-WSIIAAHLP-KRTDNDIKNYWNT 110 899*****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-25	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.466	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	2.1E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	3.4E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	7.3E-17	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.61E-11	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.6E-23	65	116	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.433	66	116	IPR017930	Myb domain
SMART	SM00717	1.2E-14	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-14	67	110	IPR001005	SANT/Myb domain
CDD	cd00167	1.61E-10	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MGRMPCCEKV GLNKGPWKTE EDEKLVAYVE RHGPGNWRSV PAKAGLQRCG KSCRLRWINY 60 LNPNIKRGSF SLEEHRTIVQ LHSLLGNKWS IIAAHLPKRT DNDIKNYWNT NIKKGLIGKG 120 LDPLTYKPIK SNTFQAYGGN FLDPSIDTTN MNHVAQSESA QIEAEARESM LQFGSLPSHL 180 PGLILSKIPT QPFPSSASLL TQRINTTYDM YALVLATNHL DLHPPPFTDP ESFPSRKLLP 240 SVSTSVGQST DPESSLSYDG IGYNMIDNSS SQMQMTMECY ATNFEDDDVM IALEAFGIAR 300 FEGIQELFDG PTTMEDLINE SFERDV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	1e-30	12	114	2	103	C-Myb DNA-Binding Domain
1msf_C	1e-30	12	114	2	103	C-Myb DNA-Binding Domain
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in trichomes, epidermis and mesophyll cells of young leaves, stems, petals, sepals, carpels and stamens. {ECO:0000269\|PubMed:23709630}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269\|PubMed:17376813, ECO:0000269\|PubMed:23709630, ECO:0000269\|PubMed:24169067}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G038500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003543953.1	0.0	transcription factor MYB41
Refseq	XP_028197185.1	0.0	transcription factor MYB41-like
Swissprot	Q9LXF1	1e-72	MYB16_ARATH; Transcription factor MYB16
TrEMBL	A0A0R0GI63	0.0	A0A0R0GI63_SOYBN; Uncharacterized protein
TrEMBL	A0A445HB46	0.0	A0A445HB46_GLYSO; Transcription factor MYB16
STRING	GLYMA13G09010.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF36085	2	2
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	4e-69	myb domain protein 16

Link Out ? help Back to Top
Phytozome	Glyma.13G038500.1.p
Entrez Gene	100817205

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang BH, et al. Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae). Int J Mol Sci, 2015. 16(3): p. 5900-21 [PMID:25782156] Cui F, et al. Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation. Mol Plant, 2016. 9(6): p. 926-38 [PMID:27060495]