PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G038100.1.p
Common NameGLYMA_13G038100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 127aa    MW: 14659.9 Da    PI: 10.4103
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G038100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.56.3e-132875148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W   Ed +l ++++ +Ggg+W+++ar+ g++R++k+ ++rw++yl
  Glyma.13G038100.1.p 28 KGPWAVGEDTILFNYIATHGGGHWNSVARCAGLRRSGKSYRLRWLNYL 75
                         799*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9532379IPR017930Myb domain
SuperFamilySSF466895.08E-1924123IPR009057Homeodomain-like
SMARTSM007172.6E-72777IPR001005SANT/Myb domain
PfamPF002491.4E-102875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-162982IPR009057Homeodomain-like
CDDcd001672.44E-63075No hitNo description
Gene3DG3DSA:1.10.10.602.6E-683124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MDVKKGGSLV QMQVKLQKHN EKEMGMRKGP WAVGEDTILF NYIATHGGGH WNSVARCAGL  60
RRSGKSYRLR WLNYLRPDVW HGNVTLQEQI LILDFHCRRG NMYGGQTCQQ LLGRTDNKIK  120
NYWRIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-1331234120MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.248621e-139cotyledon| flower| root| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First detected in 15-20 mm buds. Expression increases as flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed only in flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G038100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536859.17e-67transcription factor MYB78
RefseqXP_028183329.17e-67transcription factor MYB78-like
SwissprotP813911e-39MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A445HAK64e-89A0A445HAK6_GLYSO; Myb-related protein 305
TrEMBLK7LY084e-89K7LY08_SOYBN; Uncharacterized protein
STRINGGLYMA13G09083.17e-90(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01530.16e-42myb domain protein 57
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]