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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.13G032200.1.p |
Common Name | GLYMA_13G032200, LOC100797847 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
MYB |
Protein Properties |
Length: 355aa MW: 39463.9 Da PI: 7.5677 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.13G032200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 54.8 | 2.2e-17 | 43 | 90 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT+eEde l++++k+ G g+W+t +++ g+ R++k+c++rw +yl
Glyma.13G032200.1.p 43 RGPWTPEEDEVLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 90
89******************************99************97 PP
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2 | Myb_DNA-binding | 46.6 | 8.2e-15 | 101 | 141 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
Glyma.13G032200.1.p 101 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 141
89***************.*********.************996 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010090 | Biological Process | trichome morphogenesis |
GO:0010468 | Biological Process | regulation of gene expression |
GO:0048354 | Biological Process | mucilage biosynthetic process involved in seed coat development |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 355 aa
Download sequence Send
to blast |
MRNPSSTTTT AATTTTKTKV KNNSNNNIGS NNSPCCNKVG LKRGPWTPEE DEVLANYIKK 60 EGEGRWRTLP KRAGLLRCGK SCRLRWMNYL RPSVKRGHIA PDEEDLILRL HRLLGNRWSL 120 IAGRIPGRTD NEIKNYWNTH LSKKLISQGI DPRTHKPLNP ASINVPSSST TSSKPLPMII 180 TNNHINPVHH DLTNMFNQGV HQVHHLGQHH HQPPASNPYD NHNPVPAAAT GDVSAMAFMD 240 NNNEDCNDDI NINYYSDDVF SSFLNSLIND DAFAAQQHHV QTEIPTPSER SIMNPLPCDD 300 RVGGHLGSIA TASAAQGYDD ELGVLWESPL VNAATFSQHV DDHITKRVHD HHNQ*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB597933 | 0.0 | AB597933.1 Glycine max W2 mRNA for R2R3 MYB transcription factor, complete cds, cultivar: Nezumisaya. |