PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G030000.1.p
Common NameGLYMA_13G030000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 74aa    MW: 8826.68 Da    PI: 10.5295
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G030000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR131.84.6e-10372280
                 FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtk 80
                         ++  Y +  GF  rk+k  k+ + gei ++tfvC +egkre+  k          +t ++Ckak+kv+ e     w++++
  Glyma.13G030000.1.p  3 YFFWYDRVKGFGPRKKKILKN-KMGEILQQTFVCFREGKREDLVKP---------KTMCKCKAKMKVHIEInLILWHISD 72
                         566799999********9999.6677**************998766.........899*********9887456787776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.3E-7372IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MGYFFWYDRV KGFGPRKKKI LKNKMGEILQ QTFVCFREGK REDLVKPKTM CKCKAKMKVH  60
IEINLILWHI SDF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G030000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020205882.16e-18protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0R0GRN01e-46A0A0R0GRN0_SOYBN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3613639