PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G233900.9.p
Common NameGLYMA_12G233900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family DBB
Protein Properties Length: 211aa    MW: 22656.5 Da    PI: 5.5924
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G233900.9.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.83.3e-06447542
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                          C+ +e  e++  C  ++  lC +C ++ H        H++vpl
  Glyma.12G233900.9.p  4 QCNVCEAAEAKVLCCADEAGLCWECDEKVHAAnklaskHQRVPL 47
                         7******99*********************66899999999986 PP
2zf-B_box29.12e-095495338
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                         ++kC+ ++e    +fC +++ llC++C +++H        H+
  Glyma.12G233900.9.p 54 MPKCDICQEALGYFFCLEDRALLCRKCDVAIHTAnayvsgHQ 95
                         799*******9*********************5455666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.495147IPR000315B-box-type zinc finger
CDDcd000211.27E-7347No hitNo description
SMARTSM003362.0E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501199.2865299IPR000315B-box-type zinc finger
SMARTSM003364.5E-165299IPR000315B-box-type zinc finger
PfamPF006432.0E-75495IPR000315B-box-type zinc finger
CDDcd000213.13E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MKIQCNVCEA AEAKVLCCAD EAGLCWECDE KVHAANKLAS KHQRVPLSTS SSHMPKCDIC  60
QEALGYFFCL EDRALLCRKC DVAIHTANAY VSGHQRFLLT GVRVGLEATD PGASSTSLKS  120
DSGEKVSDSS VSRKVSTAPQ PSNYNEVLPA EVGGVGEFPS AKVSFGGGST AGNISQWTID  180
EFIGLNEFSQ NYDYMEGSSR YCRVQIHLLS *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.219830.0cotyledon| leaf| pod| somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G233900.9.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0983590.0BT098359.1 Soybean clone JCVI-FLGm-23I7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540510.11e-145B-box zinc finger protein 22 isoform X1
RefseqXP_006592945.11e-147B-box zinc finger protein 22 isoform X3
RefseqXP_014620592.11e-147B-box zinc finger protein 22 isoform X2
RefseqXP_028195308.11e-145B-box zinc finger protein 22-like isoform X1
RefseqXP_028195309.11e-147B-box zinc finger protein 22-like isoform X2
RefseqXP_028195310.11e-147B-box zinc finger protein 22-like isoform X3
SwissprotQ9SYM22e-77BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A0R0HIT51e-155A0A0R0HIT5_SOYBN; Uncharacterized protein
TrEMBLA0A0R0HJ451e-154A0A0R0HJ45_SOYBN; Uncharacterized protein
TrEMBLA0A445HUC11e-155A0A445HUC1_GLYSO; B-box zinc finger protein 22 isoform C
STRINGGLYMA12G36260.41e-145(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.24e-79light-regulated zinc finger protein 1