PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G233900.4.p | ||||||||
Common Name | GLYMA_12G233900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | DBB | ||||||||
Protein Properties | Length: 209aa MW: 22212.9 Da PI: 5.2967 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.9 | 3.2e-06 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC +C ++ H H++vpl Glyma.12G233900.4.p 4 QCNVCEAAEAKVLCCADEAGLCWECDEKVHAAnklaskHQRVPL 47 7******99*********************66899999999986 PP | |||||||
2 | zf-B_box | 29.2 | 2e-09 | 54 | 95 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 ++kC+ ++e +fC +++ llC++C +++H H+ Glyma.12G233900.4.p 54 MPKCDICQEALGYFFCLEDRALLCRKCDVAIHTAnayvsgHQ 95 799*******9*********************5455666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.495 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.03E-8 | 3 | 47 | No hit | No description |
SMART | SM00336 | 2.0E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.286 | 52 | 99 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.5E-16 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.0E-7 | 54 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.46E-10 | 55 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0000989 | Molecular Function | transcription factor activity, transcription factor binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MKIQCNVCEA AEAKVLCCAD EAGLCWECDE KVHAANKLAS KHQRVPLSTS SSHMPKCDIC 60 QEALGYFFCL EDRALLCRKC DVAIHTANAY VSGHQRFLLT GVRVGLEATD PGASSTSLKS 120 DSGEKVSDSS VSRKVSTAPQ PSNYNEVLPA EVGGVGEFPS AKVSFGGGST AGNISQWTID 180 EFIGLNEFSQ NYDYMEGSSR GVKGQGWG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.21983 | 0.0 | cotyledon| leaf| pod| somatic embryo |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G233900.4.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098359 | 0.0 | BT098359.1 Soybean clone JCVI-FLGm-23I7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006592945.1 | 1e-147 | B-box zinc finger protein 22 isoform X3 | ||||
Refseq | XP_028195310.1 | 1e-147 | B-box zinc finger protein 22-like isoform X3 | ||||
Swissprot | Q9SYM2 | 1e-77 | BBX22_ARATH; B-box zinc finger protein 22 | ||||
TrEMBL | A0A445HUC5 | 1e-153 | A0A445HUC5_GLYSO; B-box zinc finger protein 22 isoform F | ||||
TrEMBL | K7LWJ7 | 1e-153 | K7LWJ7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G36260.4 | 1e-145 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 2e-78 | light-regulated zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G233900.4.p |