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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.12G233900.13.p |
| Common Name | GLYMA_12G233900, LOC100819131 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
DBB |
| Protein Properties |
Length: 295aa MW: 32033.3 Da PI: 4.902 |
| Description |
DBB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.12G233900.13.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 19 | 3e-06 | 85 | 129 | 4 | 42 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
C+ +e e++ C ++ lC +C ++ H H++vpl
Glyma.12G233900.13.p 85 IQCNVCEAAEAKVLCCADEAGLCWECDEKVHAAnklaskHQRVPL 129
57******99*********************66899999999986 PP
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| 2 | zf-B_box | 28.4 | 3.4e-09 | 136 | 177 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
++kC+ ++e +fC +++ llC++C +++H H+
Glyma.12G233900.13.p 136 MPKCDICQEALGYFFCLEDRALLCRKCDVAIHTAnayvsgHQ 177
799*******9*********************5455666665 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009641 | Biological Process | shade avoidance |
| GO:0009658 | Biological Process | chloroplast organization |
| GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process |
| GO:0010099 | Biological Process | regulation of photomorphogenesis |
| GO:0015995 | Biological Process | chlorophyll biosynthetic process |
| GO:0016607 | Cellular Component | nuclear speck |
| GO:0000989 | Molecular Function | transcription factor activity, transcription factor binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 295 aa
Download sequence Send
to blast |
MNLVAAKNIL HFFLLSLLRH FLNPAPLLRG APNLFFSFFS LSQFQTVDLD TLLEKEVFFE 60
GKEGIFCVGG WNPEFGLVGV ERMKIQCNVC EAAEAKVLCC ADEAGLCWEC DEKVHAANKL 120
ASKHQRVPLS TSSSHMPKCD ICQEALGYFF CLEDRALLCR KCDVAIHTAN AYVSGHQRFL 180
LTGVRVGLEA TDPGASSTSL KSDSGEKVSD SSVSRKVSTA PQPSNYNEVL PAEVGGVGEF 240
PSAKVSFGGG STAGNISQWT IDEFIGLNEF SQNYDYMEGS SRSSDSSFVI DCVY*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
