PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G233900.1.p
Common NameGLYMA_12G233900, LOC100819131
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family DBB
Protein Properties Length: 375aa    MW: 41033.2 Da    PI: 4.7262
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G233900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.54.3e-0686129542
             zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                           C+ +e  e++  C  ++  lC +C ++ H        H++vpl
  Glyma.12G233900.1.p  86 QCNVCEAAEAKVLCCADEAGLCWECDEKVHAAnklaskHQRVPL 129
                          7******99*********************66899999999986 PP
2zf-B_box27.94.8e-09136177338
             zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                          ++kC+ ++e    +fC +++ llC++C +++H        H+
  Glyma.12G233900.1.p 136 MPKCDICQEALGYFFCLEDRALLCRKCDVAIHTAnayvsgHQ 177
                          799*******9*********************5455666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.0E-1182129IPR000315B-box-type zinc finger
PROSITE profilePS5011910.5882129IPR000315B-box-type zinc finger
CDDcd000212.83E-885129No hitNo description
SMARTSM003364.5E-16134181IPR000315B-box-type zinc finger
PROSITE profilePS501199.286134181IPR000315B-box-type zinc finger
PfamPF006434.8E-7136177IPR000315B-box-type zinc finger
CDDcd000217.06E-10137181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MNLVAAKNIL HFFLLSLLRH FLNPAPLLRG APNLFFSFFS LSQFQTVDLD TLLEKEVFFE  60
GKEGIFCVGG WNPEFGLVGV ERMKIQCNVC EAAEAKVLCC ADEAGLCWEC DEKVHAANKL  120
ASKHQRVPLS TSSSHMPKCD ICQEALGYFF CLEDRALLCR KCDVAIHTAN AYVSGHQRFL  180
LTGVRVGLEA TDPGASSTSL KSDSGEKVSD SSVSRKVSTA PQPSNYNEVL PAEVGGVGEF  240
PSAKVSFGGG STAGNISQWT IDEFIGLNEF SQNYDYMEGS SRADGGKLGD SDSPVLRSGE  300
EEMEEEDDYL ERVPDSSWTV PQIPSPPTSS GLCWPKDHTN LYGSSDSVLF VPDISFSHLQ  360
QSQISIFLRR RRQL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.219830.0cotyledon| leaf| pod| somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G233900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0983590.0BT098359.1 Soybean clone JCVI-FLGm-23I7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540510.10.0B-box zinc finger protein 22 isoform X1
SwissprotQ9SYM23e-88BBX22_ARATH; B-box zinc finger protein 22
TrEMBLK7LWJ80.0K7LWJ8_SOYBN; Uncharacterized protein
STRINGGLYMA12G36260.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45663453
Representative plantOGRP18041634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.13e-86light-regulated zinc finger protein 1