PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G233900.1.p | ||||||||
Common Name | GLYMA_12G233900, LOC100819131 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | DBB | ||||||||
Protein Properties | Length: 375aa MW: 41033.2 Da PI: 4.7262 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.5 | 4.3e-06 | 86 | 129 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC +C ++ H H++vpl Glyma.12G233900.1.p 86 QCNVCEAAEAKVLCCADEAGLCWECDEKVHAAnklaskHQRVPL 129 7******99*********************66899999999986 PP | |||||||
2 | zf-B_box | 27.9 | 4.8e-09 | 136 | 177 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 ++kC+ ++e +fC +++ llC++C +++H H+ Glyma.12G233900.1.p 136 MPKCDICQEALGYFFCLEDRALLCRKCDVAIHTAnayvsgHQ 177 799*******9*********************5455666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.0E-11 | 82 | 129 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.58 | 82 | 129 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.83E-8 | 85 | 129 | No hit | No description |
SMART | SM00336 | 4.5E-16 | 134 | 181 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.286 | 134 | 181 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.8E-7 | 136 | 177 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.06E-10 | 137 | 181 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0000989 | Molecular Function | transcription factor activity, transcription factor binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MNLVAAKNIL HFFLLSLLRH FLNPAPLLRG APNLFFSFFS LSQFQTVDLD TLLEKEVFFE 60 GKEGIFCVGG WNPEFGLVGV ERMKIQCNVC EAAEAKVLCC ADEAGLCWEC DEKVHAANKL 120 ASKHQRVPLS TSSSHMPKCD ICQEALGYFF CLEDRALLCR KCDVAIHTAN AYVSGHQRFL 180 LTGVRVGLEA TDPGASSTSL KSDSGEKVSD SSVSRKVSTA PQPSNYNEVL PAEVGGVGEF 240 PSAKVSFGGG STAGNISQWT IDEFIGLNEF SQNYDYMEGS SRADGGKLGD SDSPVLRSGE 300 EEMEEEDDYL ERVPDSSWTV PQIPSPPTSS GLCWPKDHTN LYGSSDSVLF VPDISFSHLQ 360 QSQISIFLRR RRQL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.21983 | 0.0 | cotyledon| leaf| pod| somatic embryo |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G233900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098359 | 0.0 | BT098359.1 Soybean clone JCVI-FLGm-23I7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003540510.1 | 0.0 | B-box zinc finger protein 22 isoform X1 | ||||
Swissprot | Q9SYM2 | 3e-88 | BBX22_ARATH; B-box zinc finger protein 22 | ||||
TrEMBL | K7LWJ8 | 0.0 | K7LWJ8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G36260.4 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4566 | 34 | 53 | Representative plant | OGRP1804 | 16 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 3e-86 | light-regulated zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G233900.1.p |
Entrez Gene | 100819131 |