PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G231500.1.p | ||||||||
Common Name | GLYMA_12G231500, LOC100814517 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | BES1 | ||||||||
Protein Properties | Length: 323aa MW: 34796.9 Da PI: 8.7679 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 192.5 | 1.5e-59 | 2 | 140 | 1 | 150 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssas.as 89 ++++r ptwkErEnnk+RERrRRaiaaki+aGLR++Gn+klpk++DnneVlkALc+ AGw+ve+DGttyrkg+kp e +e++g s+ as Glyma.12G231500.1.p 2 TSGTRLPTWKERENNKKRERRRRAIAAKIFAGLRMYGNFKLPKHCDNNEVLKALCNKAGWTVEPDGTTYRKGCKPSEGMEIVGGSSAaAS 91 5899************************************************************************9999887655449* PP DUF822 90 pesslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslvsssl 150 p+ss++ +sp++sy++sp sss p + +i++ + +sl+p+l++ls++sss+ Glyma.12G231500.1.p 92 PCSSYH--------PSPCASYNPSPGSSS-PY---YTQIPNPDGNSLIPWLKNLSTASSSA 140 ******........***********9875.33...34456667789********9987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 3.6E-57 | 3 | 134 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MTSGTRLPTW KERENNKKRE RRRRAIAAKI FAGLRMYGNF KLPKHCDNNE VLKALCNKAG 60 WTVEPDGTTY RKGCKPSEGM EIVGGSSAAA SPCSSYHPSP CASYNPSPGS SSPYYTQIPN 120 PDGNSLIPWL KNLSTASSSA SSPKLPHLYL HSGSISAPVT PPLSSPTART PRINAEWDEQ 180 SARPGPGWTR QQHYSFLPSS SPPSPGRQVV DPEWFAGIKL PHVSPTSPTF SLVSSNPFAF 240 KEHALPSSGS PMWTPAQSGT CSPAVPPGSY QNADIPMSDA VSDEFAFGSN VLGLVKPWEG 300 ERIHEEFGSD DLELTLGNSK TR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 9e-23 | 6 | 87 | 372 | 452 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 9e-23 | 6 | 87 | 372 | 452 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 9e-23 | 6 | 87 | 372 | 452 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 9e-23 | 6 | 87 | 372 | 452 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.6434 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G231500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003540502.1 | 0.0 | BES1/BZR1 homolog protein 4 | ||||
Swissprot | Q9ZV88 | 1e-128 | BEH4_ARATH; BES1/BZR1 homolog protein 4 | ||||
TrEMBL | I1LV85 | 0.0 | I1LV85_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G36060.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2661 | 33 | 75 | Representative plant | OGRP1595 | 15 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78700.1 | 1e-103 | BES1/BZR1 homolog 4 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G231500.1.p |
Entrez Gene | 100814517 |