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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Glyma.12G216100.2.p |
| Common Name | GLYMA_12G216100 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
GRAS |
| Protein Properties |
Length: 412aa MW: 45159.6 Da PI: 4.7895 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.12G216100.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 197.9 | 6.4e-61 | 200 | 405 | 1 | 208 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90
l++lL++cA+a+s+++++ ++l+ r ++ +s +g+p+qRl ay++e+L ar + s++++y+al+++e + +e l++++l++e++P+
Glyma.12G216100.2.p 200 LKQLLIACAKALSENNMNDFDQLVGRAKDAVSINGEPIQRLGAYMVEGLVARTQASGNSIYHALRCKEPE---GDELLTYMQLLFEICPY 286
689******************************************************************9...9**************** PP
GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
lkf++++aN aI ea +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+ + + e +g+rLa + e++g+p+ef
Glyma.12G216100.2.p 287 LKFGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSKyaRGDGPEVVGKRLALMSEKFGIPVEF 376
************************************************************99999999********************** PP
GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvl 208
+ v d++ e+L+++pgEal l l
Glyma.12G216100.2.p 377 HG-VPVFAPDVTREMLDIRPGEALGCELPL 405
**.688899**************9776655 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 412 aa
Download sequence Send
to blast |
MDSQQLFSFG GVTSAGLPYM SSFPTVPSLP NSLLRSLKYD TGNSPNSPFS TYFDSDTLSA 60
LSDGQEQYSP GEILSGVSSS LETNHYMYNR SISTLDSFPL YSDRNSLLQN ASSNQKIQHA 120
LLELETALMA PDDDQVTTPN TLAERHRSWN NENHVSQHNT QAQPSYATGN RQSSEVVHVE 180
KRQKLMEEEA TLEAFPPNNL KQLLIACAKA LSENNMNDFD QLVGRAKDAV SINGEPIQRL 240
GAYMVEGLVA RTQASGNSIY HALRCKEPEG DELLTYMQLL FEICPYLKFG YMAANGAIAE 300
ACRNEDRIHI IDFQIAQGTQ WMTLLQALAA RPGGAPHVRI TGIDDPVSKY ARGDGPEVVG 360
KRLALMSEKF GIPVEFHGVP VFAPDVTREM LDIRPGEALG CELPLATPSH S*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
