PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G194400.4.p
Common NameGLYMA_12G194400, LOC100797992
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 765aa    MW: 82640.8 Da    PI: 6.0301
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G194400.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2092147156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Glyma.12G194400.4.p  92 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 147
                          688999***********************************************999 PP
2START219.21.3e-682865051206
                          HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
                START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                          ela +a++el+ +a+ +ep+W +     + +n+de++++f+++ +     ++ ea+r+++vv+m++++lve+l+d++ qW++ +     +
  Glyma.12G194400.4.p 286 ELAVAAMEELIGMAQMGEPLWLTTLdgtTVLNEDEYIRSFPRGIGpkpvgFKCEASRETAVVIMNHVNLVEILMDVN-QWSTVFSgivsR 374
                          57899********************99999************999********************************.************ PP

                          EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS
                START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161
                          a+tlev+s+g      galq+m+ae q++splvp R+++fvRy++q+g+g+w++vdvS+d+ ++ p    ++R++++pSg+li++++ng+
  Glyma.12G194400.4.p 375 AMTLEVLSTGvagnynGALQVMTAEVQVPSPLVPtRESYFVRYCKQHGDGTWAVVDVSLDNLRPSP----SARCRRRPSGCLIQEMPNGY 460
                          ****************************************************************99....5******************* PP

                          EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          skv+wvehv++++r +h+l+++lv+sg+a+gak+w a l+rqce+
  Glyma.12G194400.4.p 461 SKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWIANLDRQCER 505
                          *******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-2371147IPR009057Homeodomain-like
SuperFamilySSF466891.84E-1982149IPR009057Homeodomain-like
PROSITE profilePS5007116.92589149IPR001356Homeobox domain
SMARTSM003891.2E-1990153IPR001356Homeobox domain
PfamPF000464.3E-1892147IPR001356Homeobox domain
CDDcd000862.72E-1992150No hitNo description
PROSITE patternPS000270124147IPR017970Homeobox, conserved site
PROSITE profilePS5084844.034277508IPR002913START domain
SuperFamilySSF559612.47E-35277507No hitNo description
CDDcd088751.16E-127281504No hitNo description
SMARTSM002349.2E-62286505IPR002913START domain
PfamPF018521.5E-57287505IPR002913START domain
Gene3DG3DSA:3.30.530.206.2E-6380505IPR023393START-like domain
SuperFamilySSF559614.49E-25524756No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MPAGIMIPAR NMPSMIGRNG TVGGFGLSSG LSLGHPNLME AGQLHPLDMP QNTSESDVPR  60
IREDDFDSAT KSGSENLEGA SGEDQDPRPN KKKRYHRHTQ HQIQEMEAFF KECPHPDDKQ  120
RKELSRELGL EPLQVKFWFQ NKRTQMKTQH ERHENTQLRT ENEKLRADNM RFREALGNAS  180
CPNCGGPTAI GEMSFDEHHL RLENARLREE IDRISAIAAK YVGKPVVSYP LVSPSSVPPR  240
PLELGVSGGF GGQPGGIGGD MYGGAAGDLL RSISGPTEAD KPIIIELAVA AMEELIGMAQ  300
MGEPLWLTTL DGTTVLNEDE YIRSFPRGIG PKPVGFKCEA SRETAVVIMN HVNLVEILMD  360
VNQWSTVFSG IVSRAMTLEV LSTGVAGNYN GALQVMTAEV QVPSPLVPTR ESYFVRYCKQ  420
HGDGTWAVVD VSLDNLRPSP SARCRRRPSG CLIQEMPNGY SKVIWVEHVE VDDRGVHNLY  480
KQLVSSGHAF GAKRWIANLD RQCERLASAM ATNIPTVDVG VITNPDGRKS MLKLAERMVI  540
SFCAGVSAST AHTWTTLSGT GADDVRVMTR KSVDDPGRPP GIVLSAATSF WLPVSPKRVF  600
EFLRDENSRS EWDILSNGGV VQEMAHIANG RDTGNCVSLL RVNSANSSQS NMLILQESCA  660
DSTGSFVIYA PVDIVAMNVV LNGGDPDYVA LLPSGFAILP DGTTAHGGGI GDIGHGGSLL  720
TVAFQILVDS VPTAKLSLGS VATVNNLIAC TVERIKAALS GEVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.213220.0flower| seed coat| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G194400.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311700.0KT031170.1 Glycine max clone HN_CCL_122 homeodomain/HOMEOBOX transcription factor (Glyma13g38430.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540308.20.0homeobox-leucine zipper protein HDG2 isoform X3
RefseqXP_028195179.10.0homeobox-leucine zipper protein HDG2-like isoform X3
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A0R0H7I00.0A0A0R0H7I0_SOYBN; Uncharacterized protein
STRINGGLYMA12G32050.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2