PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G186200.1.p
Common NameGLYMA_12G186200, LOC100780264
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 245aa    MW: 27616.7 Da    PI: 7.3234
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G186200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.97.3e-4841341127
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                          lppGfrF Pt+eelv +yL++++eg+ +++++vi+ +di+ vePw+Lp+     +++++++w+fFs+r++++a+g r+nr+t+sgyWkat
  Glyma.12G186200.1.p   4 LPPGFRFYPTEEELVFFYLHNQLEGQIHDTSRVIPVIDINGVEPWNLPSlageLCRGDTEQWFFFSPRQEREARGGRPNRTTASGYWKAT 93 
                          79****************************9*****************545654445777****************************** PP

                  NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                          g+  +v+s++++++g+kkt+vfykg+ap+g+kt+W mhey+
  Glyma.12G186200.1.p  94 GSPGHVYSSDNKVIGMKKTMVFYKGKAPTGRKTKWKMHEYK 134
                          ****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-503159IPR003441NAC domain
PROSITE profilePS5100549.8984161IPR003441NAC domain
PfamPF023653.1E-255134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDDLPPGFRF YPTEEELVFF YLHNQLEGQI HDTSRVIPVI DINGVEPWNL PSLAGELCRG  60
DTEQWFFFSP RQEREARGGR PNRTTASGYW KATGSPGHVY SSDNKVIGMK KTMVFYKGKA  120
PTGRKTKWKM HEYKAIEHSD QSNTAPPKLR HEFSLCRVYV ISGSFRSFDR RPLDMPRVEL  180
RVVDGDRGAA STSAQAQQRS SSHTSHSGGD AHVTDAGAGS SGTNWNASNR VEEPLWEWEQ  240
LDWP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-38415917163NO APICAL MERISTEM PROTEIN
1ut4_B3e-38415917163NO APICAL MERISTEM PROTEIN
1ut7_A3e-38415917163NO APICAL MERISTEM PROTEIN
1ut7_B3e-38415917163NO APICAL MERISTEM PROTEIN
3swm_A2e-38415920166NAC domain-containing protein 19
3swm_B2e-38415920166NAC domain-containing protein 19
3swm_C2e-38415920166NAC domain-containing protein 19
3swm_D2e-38415920166NAC domain-containing protein 19
3swp_A2e-38415920166NAC domain-containing protein 19
3swp_B2e-38415920166NAC domain-containing protein 19
3swp_C2e-38415920166NAC domain-containing protein 19
3swp_D2e-38415920166NAC domain-containing protein 19
4dul_A3e-38415917163NAC domain-containing protein 19
4dul_B3e-38415917163NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G186200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352341e-162AC235234.1 Glycine max strain Williams 82 clone GM_WBb0028B23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539476.10.0NAC domain-containing protein 90
RefseqXP_028193868.10.0NAC domain-containing protein 90-like
SwissprotQ9FMR38e-95NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A0B2R1060.0A0A0B2R106_GLYSO; NAC domain-containing protein 90
TrEMBLA0A0R0H7430.0A0A0R0H743_SOYBN; Uncharacterized protein
STRINGGLYMA12G31150.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Representative plantOGRP22781136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.14e-90NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]