PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G179000.2.p
Common NameGLYMA_12G179000, LOC100802769
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 411aa    MW: 45174.9 Da    PI: 8.1161
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G179000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.5e-07241263123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C+ Cgk F+r  nL+ H+r H
  Glyma.12G179000.2.p 241 HYCQVCGKGFKRDANLRMHMRAH 263
                          68*******************99 PP
2zf-C2H210.70.0016332355123
                          EEETTTT.EEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                          y+C+ C+ k Fs  s+L++H + +
  Glyma.12G179000.2.p 332 YVCKRCNqKQFSVLSDLRTHEKHC 355
                          9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.35E-6239266No hitNo description
PROSITE profilePS5015712.653241268IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-7241298IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034241263IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280243263IPR007087Zinc finger, C2H2
SMARTSM00355160294327IPR015880Zinc finger, C2H2-like
SMARTSM0035523332354IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MISRATSSFQ SVHHQGLQMF PDAEDFVSPS VESGSGTSHS SSLLFNLSIL KDKLSEVQTL  60
VGVILSPNQS LPESTSMAIS SMNSTIQEIV VTATSMMFTC QQMALTAPPG TNNNTNKLHH  120
HQNKSLPHSS NINFATNGSC VLGNNIGTDN ISDHHGLFSS TESETLDWFS ESYNNNDDNS  180
NSNIISKVAI SENNIITRGG GGGGVLSPRD EPNEEGLSPK MNSDDIIIEL DAANLLAKYT  240
HYCQVCGKGF KRDANLRMHM RAHGDEYKTN AALSNPIKNQ RDLECLMSVK PKRYSCPQEG  300
CRWNQRHAKF QPLKSMICAK NHYKRSHCPK MYVCKRCNQK QFSVLSDLRT HEKHCGDLKW  360
LCSCGTSFSR KDKLMGHVAL FVGHQPAINN NGLSYSGKLI RAAPHIANAD *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.238370.0root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G179000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-149AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539439.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
RefseqXP_006592722.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
RefseqXP_028193417.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
RefseqXP_028193418.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
TrEMBLA0A0B2R1710.0A0A0B2R171_GLYSO; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLK7LVM10.0K7LVM1_SOYBN; Uncharacterized protein
STRINGGLYMA12G30285.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-104C2H2 family protein