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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.12G174100.1.p |
Common Name | GLYMA_12G174100, LOC100778135 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
ARF |
Protein Properties |
Length: 701aa MW: 76824.9 Da PI: 7.7282 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.12G174100.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 75.7 | 5.1e-24 | 109 | 210 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF
Glyma.12G174100.1.p 109 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFL 196
89****************************986445444..8************************************************ PP
E-SSSEE..EEEEE-S CS
B3 84 ldgrsefelvvkvfrk 99
+ +++ l+v+++r+
Glyma.12G174100.1.p 197 --RAENGDLCVGIRRA 210
..4488999****997 PP
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2 | Auxin_resp | 111.8 | 6.9e-37 | 275 | 358 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83
a++ a+++++FevvY+Pra t+eF+++++ v+ a+++++s GmRfkm fetedss++++ +Gt+++v+ ldp+rWpnS+Wr+L+
Glyma.12G174100.1.p 275 AVTLAASNQPFEVVYYPRANTPEFCIRTSAVRGAMRIQWSSGMRFKMPFETEDSSRISWfMGTIASVQLLDPIRWPNSPWRLLQ 358
678899****************************************************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 701 aa
Download sequence Send
to blast |
MKETDKSLDP QLWHACAGGM VQMPPVNSKV FYFPQGHAEH AQSNVDFGAA RIPIPPLILC 60 CVAAVKFLAD PETDEVFARL RMVPLRNSEL DYEDSDGNGA EGSEKPASFA KTLTQSDANN 120 GGGFSVPRYC AETIFPRLDY SAEPPVQTVI AKDVHGEVWK FRHIYRGTPR RHLLTTGWSS 180 FVNQKKLVAG DSIVFLRAEN GDLCVGIRRA KRGGVGGAEG PCGWSSSGGG LGPGPGLGLG 240 PGPGPYGAFS GFLREESKVV RSGRPKVSGE SVREAVTLAA SNQPFEVVYY PRANTPEFCI 300 RTSAVRGAMR IQWSSGMRFK MPFETEDSSR ISWFMGTIAS VQLLDPIRWP NSPWRLLQVT 360 WDEPDLLHNV KRVSPWLVEL VSNVPIIHLA PFSPPRKKLR FPQHPEFPLD FQFPIPSFSG 420 NPFGSSTSSP LCCLSDNAPA GIQGARHAQI GISLSDLHLN NKLQLGLLPT NVHQLNLHTG 480 ICNGNITNHG KSKESLSCLL TMGNSNKSLE KSDHVKRHQF LLFGQPILTE QQISRSSSDV 540 LSQNFTVTDD ENKEKKEKGF LSDSQSSVSP GKSSSTTEFS WQVGSDTSHC KVFIESEDVG 600 RTLDLSCLGS YEELYMRLAN MFGIERSEML SHVLYRDAAG ALKQTGEEPF SEFMKTAKRL 660 TILTDSNNKD SRRVWITGIR NAEHGLDTAS NKTGPLGIFA *
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Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Gma.24928 | 0.0 | cotyledon| root| seed coat| somatic embryo| stem |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |