PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G171700.1.p
Common NameGLYMA_12G171700, LOC100815213
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 501aa    MW: 56248.9 Da    PI: 8.6177
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G171700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.1e-056789123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C+ C+k F r  nL+ H r H
  Glyma.12G171700.1.p 67 FICEVCNKGFQRDQNLQLHRRGH 89
                         89*******************88 PP
2zf-C2H211.80.00072144166123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H + +
  Glyma.12G171700.1.p 144 WKCEKCSKKYAVQSDWKAHNKIC 166
                          58*****************8876 PP
3zf-C2H210.90.0014174192523
                          TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                          dCg+ Fsrk+++++H   +
  Glyma.12G171700.1.p 174 DCGTIFSRKDSFVTHRAFC 192
                          9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.5E-66689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.42E-76689No hitNo description
PfamPF121717.2E-56789IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0266789IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8666789IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM00355170109139IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-4132165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.42E-7139164No hitNo description
SMARTSM00355160144164IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MMSQEAIPAP SNNNNLRDST VQLHEPNSNP NPNPNSVKRK RSLPGTPDPN AEVIALSPKS  60
LMATNRFICE VCNKGFQRDQ NLQLHRRGHN LPWKLRQRNK EEVVKKKVYV CPEKTCVHHD  120
PCRALGDLTG IKKHFSRKHG EKKWKCEKCS KKYAVQSDWK AHNKICGTRQ YKCDCGTIFS  180
RKDSFVTHRA FCDAMAEQNA RLPSVLSNLG SEILMNAAQA PRVMPQGLQL HGFHSEFGGP  240
GQEPYIGNFA DVNHHEHKLR MPLWLDQTNN PLQLNHHHPL SVSSNSSSLF SPGTTLAEVN  300
NMFGTSSSSQ GQWLNYRYPP EAISFTHANV SMAHGLKLEQ EENKGNLSHS VSSLYPSHME  360
SARILSDNNN SAFDNSNFGL LDPNNISSTS SNNNRHNNNV VEIQKLFRQG NQLAENFNHI  420
VNSQASTNIG DQGFSLSSMN KGLEHMVMPR IEEWESGEPK RMENQQVLQS STSNTEEHLT  480
KDFMGVGAVM NLQSQFHGHY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-35140208371Zinc finger protein JACKDAW
5b3h_F4e-35140208371Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.384520.0cotyledon
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G171700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0979400.0BT097940.1 Soybean clone JCVI-FLGm-22B20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540171.10.0protein indeterminate-domain 9
RefseqXP_028195355.10.0zinc finger protein BALDIBIS-like
TrEMBLA0A0B2QYF00.0A0A0B2QYF0_GLYSO; Protein indeterminate-domain 2 isoform A
TrEMBLK7LVG20.0K7LVG2_SOYBN; Uncharacterized protein
STRINGGLYMA12G29370.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-89C2H2-like zinc finger protein