![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.12G171000.4.p | ||||||||
Common Name | GLYMA_12G171000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 773aa MW: 85780 Da PI: 7.0369 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.1 | 3.9e-24 | 162 | 263 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae++ ++ ++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F Glyma.12G171000.4.p 162 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyKK-QRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL- 249 99****************************8633.345679************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + +++el+++++r+ Glyma.12G171000.4.p 250 -RGENGELRLGIRRA 263 .4499999****996 PP | |||||||
2 | Auxin_resp | 116.2 | 2.9e-38 | 288 | 370 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 +a+a+s ks+F+v+Y+Pras+++F v+++k+ k++k++v++G+Rfkm+fe+++s+err+ sG+v+g+sdldp++Wp+SkWr+L Glyma.12G171000.4.p 288 VANAISAKSMFHVFYSPRASHADFAVPYQKYIKSIKNPVTIGTRFKMKFEMDESPERRCtSGIVTGMSDLDPYKWPKSKWRCL 370 689********************************************************9**********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.67E-44 | 153 | 274 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-40 | 155 | 273 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.35E-23 | 160 | 262 | No hit | No description |
PROSITE profile | PS50863 | 13.225 | 162 | 264 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-22 | 162 | 263 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-24 | 162 | 264 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.1E-32 | 288 | 370 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 16.779 | 637 | 727 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.81E-8 | 639 | 708 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 773 aa Download sequence Send to blast |
MEIDLNDAVT SEAEKSASCN GECEKGAALS SPTCSSSGSS STRVSSSYIE LWHACAGPLT 60 SLPKKGNVVV YFPQGHLEQA ASFSPFSPME MPTYDLQPQI FCRVVNIQLL ANKENDEVYT 120 QVTLLPQAEL AGMYMEGKEL EKLGADEEGN ETTPTKSTPH MFCKTLTASD TSTHGGFSVP 180 RRAAEDCFPP LDYKKQRPSQ ELVAKDLHGV EWKFRHIYRG QPRRHLLTTG WSIFVSQKNL 240 VSGDAVLFLR GENGELRLGI RRAARPRNGL PESIVGSQSY YPNFLSSVAN AISAKSMFHV 300 FYSPRASHAD FAVPYQKYIK SIKNPVTIGT RFKMKFEMDE SPERRCTSGI VTGMSDLDPY 360 KWPKSKWRCL MVRWDEDIEI NHQDRVSPWE VDPSASLPPL SIQSSRRLKK LRPGLLAAAP 420 NHLTTGSSGF MDSEESVRSS KVLQGQENTG FMSLYYGCDT VTKQPEFEIR SPSHPNLAST 480 GVRKIAAAEF MRVHPSSYAG FTETNMFPRV LQGQEICPFR SLAGKVDLNF GSWGKPNVSY 540 TNYNLHQATK PNFHSFGPEV VQTAYFPYGD IHKAGQGITI PNEQKLQDNI SGAASLGANM 600 RIPNDDNFKG KVNACKLFGF PLSRETTAQN LQNSSKRSCT KVHKQGSLVG RAIDLSRLSS 660 YNDLLIELER LFSMEGLLID PNKGWRILYT DSENDIMVVG DDPWHLPFVC SEFCDVVSKI 720 HIHTQEEVEK MTIGMMINDD SQSCLEQAPV MVEASKSSSV GQPDSSPTVV RM* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-119 | 50 | 393 | 22 | 354 | Auxin response factor 1 |
4ldw_A | 1e-119 | 50 | 393 | 22 | 354 | Auxin response factor 1 |
4ldw_B | 1e-119 | 50 | 393 | 22 | 354 | Auxin response factor 1 |
4ldx_A | 1e-119 | 50 | 393 | 22 | 354 | Auxin response factor 1 |
4ldx_B | 1e-119 | 50 | 393 | 22 | 354 | Auxin response factor 1 |
4ldy_A | 1e-119 | 50 | 393 | 22 | 354 | Auxin response factor 1 |
4ldy_B | 1e-119 | 50 | 393 | 22 | 354 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.24737 | 0.0 | cotyledon| epicotyl| leaf |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.12G171000.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FJ617271 | 0.0 | FJ617271.1 Lotus japonicus auxin response factor 4 (ARF4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006592680.1 | 0.0 | auxin response factor 4 isoform X2 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A0R0H664 | 0.0 | A0A0R0H664_SOYBN; Auxin response factor | ||||
STRING | GLYMA12G29280.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.12G171000.4.p |