PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G160100.1.p | ||||||||
Common Name | GLYMA_12G160100, LOC100793870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 134aa MW: 15387.8 Da PI: 10.1101 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 120.3 | 1.8e-37 | 2 | 115 | 13 | 128 |
NAM 13 elvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelv 100 elv +yLk+kv + +l++ ++i+e++++k++PwdLp e+e yfFs++ ky++g+r+nrat+sgyWkatg dk+++++ ++++ Glyma.12G160100.1.p 2 ELVLQYLKRKVFSCPLPA-SIIPELHVCKSDPWDLPGD---LEQERYFFSTKVAKYPNGNRSNRATNSGYWKATGLDKQIVTSkgNNQVF 87 9*****************.89***************54...46799***********************************997777789 PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 + ktLvf +g+ p g++tdW+mheyrl Glyma.12G160100.1.p 88 EMNKTLVFCRGKPPYGSRTDWIMHEYRL 115 **************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 38.555 | 1 | 133 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-16 | 2 | 115 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.23E-40 | 2 | 122 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MELVLQYLKR KVFSCPLPAS IIPELHVCKS DPWDLPGDLE QERYFFSTKV AKYPNGNRSN 60 RATNSGYWKA TGLDKQIVTS KGNNQVFEMN KTLVFCRGKP PYGSRTDWIM HEYRLILNGS 120 QSKVRPNKLL LFM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-30 | 2 | 116 | 29 | 143 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-30 | 2 | 116 | 29 | 143 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-30 | 2 | 116 | 29 | 143 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-30 | 2 | 116 | 29 | 143 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-30 | 2 | 116 | 32 | 146 | NAC domain-containing protein 19 |
3swm_B | 1e-30 | 2 | 116 | 32 | 146 | NAC domain-containing protein 19 |
3swm_C | 1e-30 | 2 | 116 | 32 | 146 | NAC domain-containing protein 19 |
3swm_D | 1e-30 | 2 | 116 | 32 | 146 | NAC domain-containing protein 19 |
3swp_A | 1e-30 | 2 | 116 | 32 | 146 | NAC domain-containing protein 19 |
3swp_B | 1e-30 | 2 | 116 | 32 | 146 | NAC domain-containing protein 19 |
3swp_C | 1e-30 | 2 | 116 | 32 | 146 | NAC domain-containing protein 19 |
3swp_D | 1e-30 | 2 | 116 | 32 | 146 | NAC domain-containing protein 19 |
4dul_A | 1e-30 | 2 | 116 | 29 | 143 | NAC domain-containing protein 19 |
4dul_B | 1e-30 | 2 | 116 | 29 | 143 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.26892 | 0.0 | cotyledon| hypocotyl| leaf| root| seed coat |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G160100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU661915 | 0.0 | EU661915.1 Glycine max NAC domain protein (NAC15) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003535156.1 | 4e-97 | NAC domain-containing protein 83 | ||||
Refseq | XP_028193310.1 | 4e-97 | NAC domain-containing protein 83-like | ||||
Swissprot | Q9FY93 | 4e-62 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | K7LIP4 | 8e-96 | K7LIP4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G20830.2 | 1e-96 | (Glycine max) | ||||
STRING | GLYMA12G18996.1 | 1e-96 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF704 | 34 | 139 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 2e-64 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G160100.1.p |
Entrez Gene | 100793870 |
Publications ? help Back to Top | |||
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