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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.12G149100.1.p |
| Common Name | GLYMA_12G149100, Glyma12g22880.1, LOC100811301 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
NAC |
| Protein Properties |
Length: 341aa MW: 37983.8 Da PI: 6.3994 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.12G149100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 167.2 | 5.7e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
lppGfrF Ptdeel+v+yL++kv+g++++l +i+evd+yk++Pw Lp k++ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk
Glyma.12G149100.1.p 14 LPPGFRFYPTDEELLVQYLCRKVAGHHFSL-PIIAEVDLYKFDPWVLPGKAAFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK 102
79**************************99.88***************888889************************************ PP
NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl
Glyma.12G149100.1.p 103 IITT-EGRKVGIKKALVFYVGKAPKGSKTNWIMHEYRL 139
9999.999****************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 341 aa
Download sequence Send
to blast |
MGVPERDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGHH FSLPIIAEVD LYKFDPWVLP 60
GKAAFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY 120
VGKAPKGSKT NWIMHEYRLL DSSRKHNLGT AKLDDWVLCR IYKKNSSAQK VEANLLAMEC 180
SNGSSPSSSS HVDDMLESLP EIDDRCFTLP RVNSVRTMQQ QDEKFGFQNM GSGFFTDWVN 240
PTDLDSVSEF GSGCQTQGMV NYDCNDLFVP SVPPFGHSHV NYMVGAPPSE EEVQSGVRTQ 300
QADGAACFQQ NPNARLLPGS GDPFGFGFIM GQQVEFGFRD *
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-104 | 1 | 170 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-104 | 1 | 170 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-104 | 1 | 170 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-104 | 1 | 170 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 1e-104 | 1 | 170 | 4 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 1e-104 | 1 | 170 | 4 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269|PubMed:25005917}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KT031216 | 0.0 | KT031216.1 Glycine max clone HN_CCL_3 NAC transcription factor (Glyma12g22880.1) mRNA, complete cds. |
