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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G120100.4.p | ||||||||
Common Name | GLYMA_12G120100, LOC100808629 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | VOZ | ||||||||
Protein Properties | Length: 480aa MW: 53846.2 Da PI: 5.0956 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 434.4 | 1.5e-133 | 235 | 451 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspw 90 pppsafl+pkcalwdc+rpaqg+ew+q+ycss+h+ la neglpg+tp+lrp+gi++kdg+lf+a+ ak+qgkevgip+cegaa++kspw Glyma.12G120100.4.p 235 PPPSAFLAPKCALWDCFRPAQGVEWCQNYCSSCHELLANNEGLPGMTPILRPGGIGVKDGPLFDAVLAKTQGKEVGIPSCEGAASTKSPW 324 89**************************************************************************************** PP VOZ 91 naaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldal 180 na+e+fdls+leget+rewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmke+gg+krsyymdpqp+s++ewhlyeyein++d + Glyma.12G120100.4.p 325 NAPEFFDLSFLEGETVREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMKEHGGQKRSYYMDPQPLSYLEWHLYEYEINNQDGC 414 ****************************************************************************************** PP VOZ 181 alyrlelklvdekksakgkvskdsladlqkklgrlta 217 alyrlelklvd+kks+kgkv+k+sl+dlq+k+g+lta Glyma.12G120100.4.p 415 ALYRLELKLVDKKKSPKGKVTKESLTDLQNKMGQLTA 451 ***********************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MMRESSKGVG GSSSLQSMKE KEKHLVEKIQ GIFNSLQCAR KEGRGNDMVI FEEQMHQLLR 60 EWKAELESPA NSLADGSFGS FPSELAQMLL GSEDKDDATS PLTKPVPLKN EIHTNNISDG 120 NFQFFQEKHF DDNQPLGHTF EGSASTLYNN AFNSSDMTQL DYHPFSLNQD MDHKPEGLIG 180 QLDLYQDLRH NTEMKNSEST QFSLEGFDCS QFFEADDNVQ HGENIIPNIL PNICPPPSAF 240 LAPKCALWDC FRPAQGVEWC QNYCSSCHEL LANNEGLPGM TPILRPGGIG VKDGPLFDAV 300 LAKTQGKEVG IPSCEGAAST KSPWNAPEFF DLSFLEGETV REWLFFDKPR RAFESGNRKQ 360 RSLPDYSGRG WHESRKQVMK EHGGQKRSYY MDPQPLSYLE WHLYEYEINN QDGCALYRLE 420 LKLVDKKKSP KGKVTKESLT DLQNKMGQLT AAVPSTDDGY GQPVKGKTKT KSENDESPK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.9278 | 0.0 | epicotyl| flower| somatic embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G120100.4.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003540951.1 | 0.0 | transcription factor VOZ1 | ||||
Refseq | XP_006592446.1 | 0.0 | transcription factor VOZ1 | ||||
Refseq | XP_014620351.1 | 0.0 | transcription factor VOZ1 | ||||
Refseq | XP_014620352.1 | 0.0 | transcription factor VOZ1 | ||||
Refseq | XP_028195233.1 | 0.0 | transcription factor VOZ1-like | ||||
Refseq | XP_028195234.1 | 0.0 | transcription factor VOZ1-like | ||||
Refseq | XP_028195235.1 | 0.0 | transcription factor VOZ1-like | ||||
Refseq | XP_028195236.1 | 0.0 | transcription factor VOZ1-like | ||||
Swissprot | Q9SGQ0 | 1e-150 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A0B2S4H9 | 0.0 | A0A0B2S4H9_GLYSO; Transcription factor VOZ1 isoform A | ||||
TrEMBL | K7LUC5 | 0.0 | K7LUC5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G14030.3 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-143 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G120100.4.p |
Entrez Gene | 100808629 |
Publications ? help Back to Top | |||
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