PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 206aa MW: 23253.2 Da PI: 10.3956

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.12G117000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.9	7e-20	22	71	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdp gk++r++lg+f+tae+Aa+a++ a+++++g Glyma.12G117000.1.p 22 HFRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEDAARAYDVAARNFRG 71 69*****.******8...557**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.3E-31	22	79	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.15E-22	22	80	IPR016177	DNA-binding domain
SMART	SM00380	1.5E-38	22	85	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.406	22	79	IPR001471	AP2/ERF domain
Pfam	PF00847	2.5E-13	22	71	IPR001471	AP2/ERF domain
CDD	cd00018	2.05E-30	22	79	No hit	No description
PRINTS	PR00367	5.4E-11	23	34	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.4E-11	45	61	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016020	Cellular Component	membrane
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MAKEKKNLSN KNKKPSNADE VHFRGVRKRP WGRYAAEIRD PGKKTRVWLG TFDTAEDAAR 60 AYDVAARNFR GPKAKNNFPF LPDNNTNVNL NKKNNNVNVK SDSPSQSSTV ESSTPEREFT 120 RRAAPAAMDR FPFLPIQQQI LVTHPVAPMR PVYFLDRAHF MTQPFPLRFE PGPVQSDSDS 180 SSVVVDCQPK RELNLDLNLA PPNEY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	4e-21	22	80	2	61	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	4e-21	22	80	5	64	ATERF1
3gcc_A	4e-21	22	80	5	64	ATERF1
5wx9_A	1e-20	10	88	2	81	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.31936	0.0	cotyledon\| epicotyl\| leaf\| pod\| root\| seed coat\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269\|PubMed:11487705}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00623	PBM	Transfer from PK19363.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.12G117000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031080	0.0	KT031080.1 Glycine max clone HN_CCL_133 AP2-EREBP transcription factor (Glyma06g44430.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014620342.1	1e-150	ethylene-responsive transcription factor 9
Swissprot	Q9FE67	1e-47	ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBL	A0A0R0HB50	1e-148	A0A0R0HB50_SOYBN; Uncharacterized protein
STRING	GLYMA12G13315.1	1e-102	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF330	34	189
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44210.1	2e-32	erf domain protein 9

Link Out ? help Back to Top
Phytozome	Glyma.12G117000.1.p
Entrez Gene	100775465

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]