PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G114300.1.p
Common NameGLYMA_12G114300, LOC100817883
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 212aa    MW: 23883.1 Da    PI: 6.3606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G114300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.8e-111865655
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                           +E++RR+++++ +++L +llP+ +   p++ l   + + +A++YIksL+
  Glyma.12G114300.1.p 18 RLVEKNRRNQMKNLYNKLNSLLPSyN---PKEALPLPDQVDEAINYIKSLE 65
                         679*********************66...9999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.08E-61069No hitNo description
SuperFamilySSF474593.01E-121079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.8841264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-111580IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-41870IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-71865IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MDQLGIIQPS SSTKVERRLV EKNRRNQMKN LYNKLNSLLP SYNPKEALPL PDQVDEAINY  60
IKSLEAKVKM AQEKKENLQG IRKRSRGCFS NNSANFAATS GFPKSPQLEI HEVGSSLQVV  120
LTCGLDHQFI FYEIIQILHE ENIEVRSVNS SLAGDSVLHV VHAEIPQSFL QFGATKVSER  180
LKRFVNGSCS DVETQPELWD FEIGTDDMWG F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G114300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540915.11e-157transcription factor bHLH162
RefseqXP_028192200.11e-157transcription factor bHLH162-like
TrEMBLA0A0B2RQ841e-155A0A0B2RQ84_GLYSO; Transcription factor bHLH162 isoform A
TrEMBLI1LS391e-155I1LS39_SOYBN; Uncharacterized protein
STRINGGLYMA12G12880.11e-156(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.18e-35bHLH family protein