PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G110400.1.p
Common NameGLYMA_12G110400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 408aa    MW: 45934 Da    PI: 5.7753
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G110400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.54e-19202252256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Glyma.12G110400.1.p 202 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 252
                          59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.26E-33201261No hitNo description
PROSITE profilePS5103223.024202259IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-32202260IPR001471AP2/ERF domain
SMARTSM003802.7E-40202265IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22202260IPR016177DNA-binding domain
PfamPF008472.3E-12203252IPR001471AP2/ERF domain
PRINTSPR003676.7E-11203214IPR001471AP2/ERF domain
PRINTSPR003676.7E-11225241IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MANNSGKSNK EGVEGTQLKV IGESEGQDWE KEKGKRLDLS SGRRQWKPVF DDASVSHRPL  60
KKIRSPEPEN PNQQQQQQPS SMLSLQPPSS RIVFPFAFEG SQHPMPFPHP FGTTNLPLFR  120
PPLHPTQQMI SFLPSQNMGY PPFLAPESTM PHEHQQHHHQ QLLQYWSDAL NLSPRGRMMM  180
MNRTEGRQML RPQAQPLNAT KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG TFDTAEDAAM  240
AYDREAFKLR GENAKLNFPE LFLNKDKAEQ STTAPASSSN EGSTSSQNTK QPEPIPEGTT  300
NTESEDMPPT ETFAVENAVT EEGISQPQEL VWGEWFNAIP AGWGPGSPVW DDLDPNNNLL  360
LHSQLPFVNP NQQEFHDAGA SSRTQQEDNN TEPGACSNIS ISFGEIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20201259160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G110400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540897.10.0ethylene-responsive transcription factor ERF054
TrEMBLK7LU620.0K7LU62_SOYBN; Uncharacterized protein
STRINGGLYMA12G12270.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-58ERF family protein