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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G105400.1.p | ||||||||
Common Name | GLYMA_12G105400, LOC100782270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 235aa MW: 27242.2 Da PI: 6.7928 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.8 | 5e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l +v+++G ++W+ ++ g+ R++k+c++rw +yl Glyma.12G105400.1.p 14 KGAWSEEEDKRLMAYVERHGHPNWRQLPKFAGLQRCGKSCRLRWMNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.6 | 1.2e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+ E+++++d++k++G++ W++Ia+ ++ gRt++++k++w++ Glyma.12G105400.1.p 67 RGNYTQKEEQIIKDLHKKHGNK-WSLIAENLP-GRTDNEIKNYWHSN 111 899*******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-24 | 8 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.174 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.49E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.17E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.468 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-25 | 65 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.2E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.08E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MVRAPYFDKN GIKKGAWSEE EDKRLMAYVE RHGHPNWRQL PKFAGLQRCG KSCRLRWMNY 60 LRPNLKRGNY TQKEEQIIKD LHKKHGNKWS LIAENLPGRT DNEIKNYWHS NLKKFLKGNE 120 NTPCDDDDEL KSTECKEFER SMNKAHSADS HHILESSVSI SSETSYTEGN SPSFSSSHTT 180 ESSTLSKEED SVVSWQTMDV LSSNFWTEPF ISENALNQDY FPISSYGTEP FFLW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-25 | 12 | 114 | 25 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.24988 | 0.0 | flower| leaf| meristem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G105400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003540874.1 | 1e-176 | transcription factor MYB8 | ||||
TrEMBL | I1LRW2 | 1e-175 | I1LRW2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G11490.1 | 1e-176 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 7e-53 | myb domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G105400.1.p |
Entrez Gene | 100782270 |