PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 306aa MW: 34317.9 Da PI: 4.6375

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.12G104800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.5	2.3e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ +v+++G+ +W+ +r g+ R++k+c++rw +yl Glyma.12G104800.1.p 14 KGTWTPEEDRKLIAYVTRYGSWNWRQLPRFAGLARCGKSCRLRWMNYL 61 799*******************************************97 PP
2	Myb_DNA-binding	58.6	1.4e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++Ede +++ +k+lG++ W++Ia++++ gRt++++k++w++ Glyma.12G104800.1.p 67 RGNFTQQEDECIIRMHKKLGNK-WSAIAAELP-GRTDNEIKNHWHTT 111 89******************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.383	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	6.91E-30	12	108	IPR009057	Homeodomain-like
SMART	SM00717	9.6E-11	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	5.4E-14	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.9E-23	15	68	IPR009057	Homeodomain-like
CDD	cd00167	1.65E-9	16	61	No hit	No description
PROSITE profile	PS51294	26.5	62	116	IPR017930	Myb domain
SMART	SM00717	2.1E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-16	67	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.3E-26	69	114	IPR009057	Homeodomain-like
CDD	cd00167	2.86E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MVRTPSCDKS GTRKGTWTPE EDRKLIAYVT RYGSWNWRQL PRFAGLARCG KSCRLRWMNY 60 LRPNVKRGNF TQQEDECIIR MHKKLGNKWS AIAAELPGRT DNEIKNHWHT TLKKWSQQNA 120 ITNEEARTSK SKDKVPNKGV TVTLPANSSL MSDNSSSSPV SSTCSEFSSI TSDNSTAASM 180 ENLVFEDDDF GFLDSYNESF WTELNLDDIS FDAPCEMDLG DTNVSFESTS CSNSNTLDSL 240 HGSTSESIVV DNDFGGFLDA YTKAAVDNFW TQPYVADMSH VPSELLVPSM AESEYFTPIY 300 DDLWG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-29	14	114	7	106	B-MYB
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.28584	0.0	flower

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.12G104800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	7e-47	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003540870.1	0.0	transcription factor MYB30 isoform X1
Refseq	XP_028193598.1	0.0	transcription factor MYB30-like isoform X1
TrEMBL	A0A445HPE6	0.0	A0A445HPE6_GLYSO; Transcription factor MYB14 isoform A
TrEMBL	I1LRW1	0.0	I1LRW1_SOYBN; Uncharacterized protein
STRING	GLYMA12G11390.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF356	33	186
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	2e-56	myb domain protein 14

Link Out ? help Back to Top
Phytozome	Glyma.12G104800.1.p
Entrez Gene	778184