PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 302aa MW: 34337 Da PI: 5.0535

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.12G104600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.2	4.4e-09	2	39	11	48
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +l+ +v+++G +W+ ++ g+ R++k+c++rw +yl Glyma.12G104600.1.p 2 KLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYL 39 79******99**********************97 PP
2	Myb_DNA-binding	60.4	3.8e-19	45	89	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eE+e +++ +k+lG++ W++Ia++++ gRt++++k++w++ Glyma.12G104600.1.p 45 RGNFTQEEEECIIRMHKKLGNR-WSAIAAELP-GRTDNEIKNHWHTT 89 89******************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.521	1	39	IPR017930	Myb domain
SMART	SM00717	46	1	41	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-6	2	39	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.91E-23	2	86	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.5E-17	2	46	IPR009057	Homeodomain-like
CDD	cd00167	9.62E-4	2	39	No hit	No description
PROSITE profile	PS51294	28.282	40	94	IPR017930	Myb domain
SMART	SM00717	3.9E-18	44	92	IPR001005	SANT/Myb domain
Pfam	PF00249	5.0E-17	45	89	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-26	47	93	IPR009057	Homeodomain-like
CDD	cd00167	3.49E-13	47	90	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MKLIAYVTRY GCWNWRQLPK FAGLARCGKS CRLRWMNYLR PNLKRGNFTQ EEEECIIRMH 60 KKLGNRWSAI AAELPGRTDN EIKNHWHTTL KKRSQQNTVT IEETRVSKSK NNESVPNKGV 120 TVTLLATSSQ MSDNSSISPV SSSCSEFSSI TSYHSTAASC MENLVFEDDD FGFLDSYNES 180 FWTQLNLDDI SNNAPCEIFS EDSNGCFQST DATQIHDSCA KSPTTSESNI VVDNDFVDFQ 240 DAYKDATVDN FWSQTYVADM SHVPTELLVH SVAESECFTP IYDDLWGQSY LYHENHHGLF 300 R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-23	2	93	17	107	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269\|PubMed:24415840}.
Uniprot	TISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269\|PubMed:24415840}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269\|PubMed:24415840}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.12G104600.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:24415840}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB029263	1e-42	AB029263.1 Glycine max gene for GmMYB6, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006593053.1	0.0	transcription factor MYB14
Swissprot	Q9SJX8	3e-47	MYB14_ARATH; Transcription factor MYB14
TrEMBL	K7LU25	0.0	K7LU25_SOYBN; Uncharacterized protein
STRING	GLYMA12G11340.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF356	33	186
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	1e-47	myb domain protein 14

Link Out ? help Back to Top
Phytozome	Glyma.12G104600.1.p

Publications ? help Back to Top
Chen Y, et al. AtMYB14 Regulates Cold Tolerance in Arabidopsis. Plant Mol. Biol. Rep., 2013. 31: p. 87-97 [PMID:24415840]