PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.12G096000.3.p

Common Name

GLYMA_12G096000

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

YABBY

Protein Properties

Length: 176aa MW: 19693.5 Da PI: 9.0248

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.12G096000.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	171.7	4.7e-53	8	149	15	170
YABBY 15 CnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsen 104 +f +vsvP++sl+++vtvrCGhC++llsvn+ + q+ + ++ ++++l ++e + k+ +++++++ + e Glyma.12G096000.3.p 8 AQFSLQCCMVSVPYSSLLTIVTVRCGHCANLLSVNMGASLQAFPPQDP--------QKQHLSFQEPSSKELGSSSKCSKI-APF----EA 84 567777789*******************************999995........667777777777666655555433.233....45 PP YABBY 105 edeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++e+pr+pp irP ekr rvPsaynrfikeeiqrikasnPdishreafs aaknWahfP+ihfgl Glyma.12G096000.3.p 85 VEHELPRIPP-IRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGL 149 7899999.9***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.6E-58	10	149	IPR006780	YABBY protein
SuperFamily	SSF47095	1.57E-7	94	142	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	9.4E-5	102	143	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MHFVFFSAQF SLQCCMVSVP YSSLLTIVTV RCGHCANLLS VNMGASLQAF PPQDPQKQHL 60 SFQEPSSKEL GSSSKCSKIA PFEAVEHELP RIPPIRPTEK RHRVPSAYNR FIKEEIQRIK 120 ASNPDISHRE AFSSAAKNWA HFPHIHFGLK NLKLDGNKQE KLDQGEGAEK SNGFY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.55759	0.0	cotyledon\| leaf\| pod\| vegetative bud

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269\|PubMed:10457020}.
Uniprot	TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269\|PubMed:10457020}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.12G096000.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT090811	0.0	BT090811.1 Soybean clone JCVI-FLGm-5K20 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001236663.1	1e-115	protein YABBY 11 isoform 2
Swissprot	Q9XFB0	1e-63	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A0R0H3G8	1e-127	A0A0R0H3G8_SOYBN; Uncharacterized protein
STRING	GLYMA12G10210.3	1e-114	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	3e-64	YABBY family protein

Link Out ? help Back to Top
Phytozome	Glyma.12G096000.3.p

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]