PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G094800.1.p
Common NameGLYMA_12G094800, LOC100786883
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 742aa    MW: 81118 Da    PI: 7.7252
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G094800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.7e-094434801954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Glyma.12G094800.1.p 443 FEHflHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVR 480
                          554459******************************88 PP
2BELL118.23.8e-38308379172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          +rqelq+kk+kL+++l+eV++rY+qy++q+q+v+ sFe++ag+g+ak+Yt+lAlk+iS++FrcLkdai++qi
  Glyma.12G094800.1.p 308 QRQELQMKKSKLVTMLDEVEQRYRQYHHQMQVVLTSFEQAAGVGAAKSYTALALKTISKQFRCLKDAISSQI 379
                          69*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.0E-59230377IPR006563POX domain
PfamPF075262.9E-48237376IPR006563POX domain
PROSITE profilePS5007112.082421484IPR001356Homeobox domain
SMARTSM003897.8E-10424488IPR001356Homeobox domain
CDDcd000861.56E-12424485No hitNo description
SuperFamilySSF466897.27E-17425490IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-28427490IPR009057Homeodomain-like
PfamPF059205.1E-18441480IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MATYFHGSTS EIPSSAEGLQ TLYLMNPNYV PYSDAAQHPT QNMLLVNPNN NNTSNTSPTS  60
TNALNLGNFS HAPPPPSPNN NNNHREQQQH HLIGVTIPSS NILGSNAAAT DPARSSFLGQ  120
HEFSSFHGGA AATSTVTASR GNYNLWGSII DQSALNIMAA TTHTPSSNMG CVASSVMSTQ  180
IGFHRPNHLS LSLSSQQTPY RSLSGEIHAI SPASRGGGGD DMRGLHNGVS SMHSVALGSK  240
YLKATQELLD EVVNVGKGIS KGEESMEGAK KEKMKGNIES TSGVGDGSSC GRENNDRAKQ  300
GVELSTAQRQ ELQMKKSKLV TMLDEVEQRY RQYHHQMQVV LTSFEQAAGV GAAKSYTALA  360
LKTISKQFRC LKDAISSQIK TTSKTLGEDN CLGVKVEGSR LRYVDHQQRQ QRALQLGMIQ  420
HNAWRPQRGL PERAVSVLRA WLFEHFLHPY PKDSDKVMLA KQTGLTRSQV SNWFINARVR  480
LWKPMVEEMY LEEVKQEPNN SSQDNNNTKG SNESSKELWS EANAAAQESG AMRFDQINIL  540
QSKAESFKNN QTTSPTEISN SNSLQSGFHL ADMQSPNKPK STSEMHQNSP GSILSVDMEM  600
KPHHHGETNN ITREGQNNNT TTKFGIESHG GGFGAFPNME DIGRFHHHVT EQLAPRFHGN  660
GVSLTLGLPH STENNLSLSG TTQHGFLSQN MHLGMRNSEN DEFCGAINTT PPSSHSGISY  720
ESIDIQNRKR FAAQLLRDFV A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16430488563Homeobox protein Meis2
3k2a_B3e-16430488563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.536460.0hypocotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G094800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540818.10.0BEL1-like homeodomain protein 1
RefseqXP_006592357.10.0BEL1-like homeodomain protein 1
RefseqXP_028194674.10.0BEL1-like homeodomain protein 1
RefseqXP_028194675.10.0BEL1-like homeodomain protein 1
TrEMBLA0A445HN010.0A0A445HN01_GLYSO; BEL1-like homeodomain protein 1 isoform A
TrEMBLK7LTX20.0K7LTX2_SOYBN; Uncharacterized protein
STRINGGLYMA12G10030.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-119BEL1-like homeodomain 1