PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G088700.7.p
Common NameGLYMA_12G088700, LOC100101904
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 492aa    MW: 54031.8 Da    PI: 7.037
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G088700.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.68.7e-11188228444
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                           k  rr+++NReAAr+sR+RKka++++Le    +L+   ++
  Glyma.12G088700.7.p 188 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTHLEQD 228
                          6889*************************877766666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.9E-8185261IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.094187231IPR004827Basic-leucine zipper domain
PfamPF001705.8E-8188230IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.82E-7189231No hitNo description
CDDcd147081.86E-20189239No hitNo description
Gene3DG3DSA:1.20.5.1703.1E-7190233No hitNo description
PROSITE patternPS000360192207IPR004827Basic-leucine zipper domain
PfamPF141441.1E-27269344IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MASQRIGETG LSESGPSSHH VPYGVLHGIS TSSGLINQGS AFDFGELEEA IVLQGIKIRN  60
DEAKASALFT GRPSATLEMF PSWPMRFQQT SRGGSKSGGE STDSGSGVNT LSTKNELRFE  120
TESPISIKAS PSDHHQAFDQ HLQQQQQQQQ QQQETATAGT SSQNQSAAKS PQEKRKGAGS  180
TSEKPLDAKT LRRLAQNREA ARKSRLRKKA YVQQLESSRL KLTHLEQDLQ RARSQGVFMG  240
CGGAGGSLSS GAAMFDMEYA RWLEDDQRHM MELRSGLQVP LPDGELRVIV DGYLSHYDEV  300
FRLKGVAVKT DVFHLINGMW TSPAERCFLW IGGFKPSELI TMLIPQLEPL VEQQIMGIHG  360
LRHSLVQAEE ALTQGLEQLQ QSLVDTIAGS PVADGVQQMV AAMGKLGNLE GFVSQADNLR  420
QITLHQLCRL LTVRQAARCF LVIGEYYGRL RALSSLWASR PRETLISDDN SCQTTTELQM  480
VQSSQNHFSS F*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.66420.0hypocotyl| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269|PubMed:20805327}.
UniprotTISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269|PubMed:20805327}.
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G088700.7.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150398e-91AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014620106.10.0transcription factor TGA9 isoform X3
SwissprotQ93XM60.0TGA9_ARATH; Transcription factor TGA9
TrEMBLI1LRG00.0I1LRG0_SOYBN; Uncharacterized protein
STRINGGLYMA12G09430.50.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.30.0bZIP family protein
Publications ? help Back to Top
  1. Liao Y, et al.
    Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis.
    Planta, 2008. 228(2): p. 225-40
    [PMID:18365246]
  2. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  3. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]