PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.12G088700.3.p

Common Name

GLYMA_12G088700, LOC100101904

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bZIP

Protein Properties

Length: 491aa MW: 53960.7 Da PI: 7.037

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.12G088700.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.6	8.7e-11	187	227	4	44
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 k rr+++NReAAr+sR+RKka++++Le +L+ ++ Glyma.12G088700.3.p 187 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTHLEQD 227 6889*************************877766666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.9E-8	184	260	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.094	186	230	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.8E-8	187	229	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.84E-20	188	238	No hit	No description
SuperFamily	SSF57959	6.82E-7	188	230	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.1E-7	189	232	No hit	No description
PROSITE pattern	PS00036	0	191	206	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.1E-27	268	343	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MASQRIGETG LSESGPSSHH VPYGVLHGIS TSSGLINQGS AFDFGELEEA IVLQGIKIRN 60 DEAKASLFTG RPSATLEMFP SWPMRFQQTS RGGSKSGGES TDSGSGVNTL STKNELRFET 120 ESPISIKASP SDHHQAFDQH LQQQQQQQQQ QQETATAGTS SQNQSAAKSP QEKRKGAGST 180 SEKPLDAKTL RRLAQNREAA RKSRLRKKAY VQQLESSRLK LTHLEQDLQR ARSQGVFMGC 240 GGAGGSLSSG AAMFDMEYAR WLEDDQRHMM ELRSGLQVPL PDGELRVIVD GYLSHYDEVF 300 RLKGVAVKTD VFHLINGMWT SPAERCFLWI GGFKPSELIT MLIPQLEPLV EQQIMGIHGL 360 RHSLVQAEEA LTQGLEQLQQ SLVDTIAGSP VADGVQQMVA AMGKLGNLEG FVSQADNLRQ 420 ITLHQLCRLL TVRQAARCFL VIGEYYGRLR ALSSLWASRP RETLISDDNS CQTTTELQMV 480 QSSQNHFSSF *

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MASQRIGETG LSESGPSSHH VPYGVLHGIS TSSGLINQGS AFDFGELEEA IVLQGIKIRN  60
DEAKASLFTG RPSATLEMFP SWPMRFQQTS RGGSKSGGES TDSGSGVNTL STKNELRFET  120
ESPISIKASP SDHHQAFDQH LQQQQQQQQQ QQETATAGTS SQNQSAAKSP QEKRKGAGST  180
SEKPLDAKTL RRLAQNREAA RKSRLRKKAY VQQLESSRLK LTHLEQDLQR ARSQGVFMGC  240
GGAGGSLSSG AAMFDMEYAR WLEDDQRHMM ELRSGLQVPL PDGELRVIVD GYLSHYDEVF  300
RLKGVAVKTD VFHLINGMWT SPAERCFLWI GGFKPSELIT MLIPQLEPLV EQQIMGIHGL  360
RHSLVQAEEA LTQGLEQLQQ SLVDTIAGSP VADGVQQMVA AMGKLGNLEG FVSQADNLRQ  420
ITLHQLCRLL TVRQAARCFL VIGEYYGRLR ALSSLWASRP RETLISDDNS CQTTTELQMV  480
QSSQNHFSSF *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.6642	0.0	hypocotyl\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269\|PubMed:20805327}.
Uniprot	TISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269\|PubMed:20805327}.

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.12G088700.3.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	8e-91	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006592325.1	0.0	transcription factor TGA9 isoform X4
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	K7LTT5	0.0	K7LTT5_SOYBN; Uncharacterized protein
STRING	GLYMA12G09430.5	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Link Out ? help Back to Top
Phytozome	Glyma.12G088700.3.p
Entrez Gene	100101904

Publications ? help Back to Top
Liao Y, et al. Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis. Planta, 2008. 228(2): p. 225-40 [PMID:18365246] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]