PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G081700.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 397aa    MW: 44061.7 Da    PI: 7.6893
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G081700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.11.8e-07229251123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y C+ Cgk F+r  nL+ H+r H
  Glyma.12G081700.1.p 229 YFCQVCGKGFKRDANLRMHMRAH 251
                          78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.17E-7227265No hitNo description
SMARTSM003556.7E-4229251IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-7229254IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.193229256IPR007087Zinc finger, C2H2
PROSITE patternPS000280231251IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-7287292IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355170289322IPR015880Zinc finger, C2H2-like
SMARTSM0035534327349IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MMPINEATIS SSTNDFQELH MFPVAMNEYL VSPSLEASSS SASHSSNSLL FHLLLLKDKL  60
GQLQNLVDVL VSPQQNLPES TPTAISTINN AIQEIIMAAT SMRFTCQQMI PSSSSGTNTT  120
NELQQKQIDH GRLLPPHHES NFVHNNRGVA SNNINIVSDI NRGQSFLLSS SIEGEALDWF  180
AESYNNNRNS GNYCNPKDDE AANIISNIMG EMSDIIELDA ADLLAKYSYF CQVCGKGFKR  240
DANLRMHMRA HGEEYKTSSA LCNPMKNNKE NSNLLLLGAE EGSGATKRYS CPQQGCRWNQ  300
RHAKFQPLKS MICAKNHYKR SHCPKMYVCN RCNQKHFSVI SDLRTHEKHC GDPKWLCSCG  360
TTFSRKDKLM GHVALFVGHT PVTSGLSSYS GKSEQL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.238374e-86root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G081700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540774.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
SwissprotQ0WT241e-103STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A0R0HDM70.0A0A0R0HDM7_SOYBN; Uncharacterized protein
STRINGGLYMA12G08680.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.12e-96C2H2 family protein