PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G079800.1.p
Common NameGLYMA_12G079800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 316aa    MW: 35840.8 Da    PI: 6.6979
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G079800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-171462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
  Glyma.12G079800.1.p 14 RGPWSPEEDTKLKEYIEKHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                         89*********************************************97 PP
2Myb_DNA-binding36.98.4e-1269111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g ++ eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Glyma.12G079800.1.p  69 GDFSDEEDRIICSLYVNIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                          679******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.681962IPR017930Myb domain
SuperFamilySSF466892.98E-2711109IPR009057Homeodomain-like
SMARTSM007175.6E-131364IPR001005SANT/Myb domain
PfamPF002491.8E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-251569IPR009057Homeodomain-like
CDDcd001679.70E-101662No hitNo description
PROSITE profilePS5129421.69663117IPR017930Myb domain
SMARTSM007171.0E-1067115IPR001005SANT/Myb domain
PfamPF002492.4E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGRAPCCDKA SVKRGPWSPE EDTKLKEYIE KHGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGD FSDEEDRIIC SLYVNIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGL  120
LPLSHHRKQP SFPSSTLQNS PPSPSSDQLY GEYCTYTPLT TTSFTSNIEP FSLPSSNYAS  180
TSTTSVSHSF YQNQDSMQQC YHPTRDNNML MFGSEGSCST SSDGSCTQGR EIIKQEEIGY  240
HSYNNDYNFM LNHSNNINDG EKSCFGEWFS QTLLTPLDYD LEDIKQLISS SSSTASFNNV  300
DENKTEEKAM YYYYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G079800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0945870.0BT094587.1 Soybean clone JCVI-FLGm-18J14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028193534.10.0transcription factor RAX2-like
TrEMBLA0A445HM890.0A0A445HM89_GLYSO; Transcription factor MYB36
TrEMBLI1LR750.0I1LR75_SOYBN; Uncharacterized protein
STRINGGLYMA12G08480.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-73myb domain protein 36