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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.12G076200.1.p |
Common Name | GLYMA_12G076200, LOC100814686 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
ARF |
Protein Properties |
Length: 702aa MW: 77188.7 Da PI: 8.0734 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.12G076200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 77.2 | 1.8e-24 | 109 | 210 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD+vvF
Glyma.12G076200.1.p 109 FAKTLTQSDANNGGGFSVPRYCAETIfprldytAEPPVQ--TVVAKDVHGETWRFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFL 196
89****************************986555555..8************************************************ PP
E-SSSEE..EEEEE-S CS
B3 84 ldgrsefelvvkvfrk 99
+ +++ l+v+++r+
Glyma.12G076200.1.p 197 --RAENGDLCVGIRRA 210
..4488999****997 PP
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2 | Auxin_resp | 117.4 | 1.2e-38 | 278 | 361 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83
a++ a+++++FevvY+Prast+eF+vk++ v++a++++++ GmRfkmafeted+s++++ +Gt+++v+ +dp+rWpnS+Wr+L+
Glyma.12G076200.1.p 278 AVTLAASNKPFEVVYYPRASTPEFCVKASAVRAAMRIQWCSGMRFKMAFETEDASRISWfMGTIASVQVVDPIRWPNSPWRLLQ 361
678899****************************************************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 702 aa
Download sequence Send
to blast |
MKEGEKVLDP QLWHACAGGM VQMPQMNSKV FYFPQGHAEH AHTNIHLRLP PFILCNVEAV 60 KFMANPETDE VFAKLSLLPL RNSELGADSD GAGGDDVAEP SCCEKPASFA KTLTQSDANN 120 GGGFSVPRYC AETIFPRLDY TAEPPVQTVV AKDVHGETWR FRHIYRGTPR RHLLTTGWSS 180 FVNQKKLVAG DSVVFLRAEN GDLCVGIRRA KKGISEGSGS GSSSVWSSAS GSGNGNCGIG 240 PYGPFSFFLK EENKMLRNGC GGNLSGRVKV RAEDVVEAVT LAASNKPFEV VYYPRASTPE 300 FCVKASAVRA AMRIQWCSGM RFKMAFETED ASRISWFMGT IASVQVVDPI RWPNSPWRLL 360 QVTWDEPDLL QNVKRVSPWL VELVSNIPLI NFTPFSPPRK KLRPQHPDFP LDVQFPIPMF 420 SGNQLGPNSP LCGFSDNAPA GIQGARHAQF GKSLSDLHLN NKLQLGMLPT NIHQLGVYNE 480 ISNGNMMTNH DKSKESLSCF LTMGKSTKSL EKSDDVKKHQ FLLFGQPILT EQQISSCSGD 540 VLSHRKRSVS DDKDKAKCLM DDSQSTLSQQ FSPGKASSAE FSWQLGLDTG HCKVFLESED 600 VGRTLDLSLF GSYEDLYRRL AIMFGIERSE ILNHVLYHDA AGAAKKTGEE PFSDFMKTAK 660 RLTILTDSSS KNIKRAFITG TRNGEHGLDA SNKTGPLSIF A*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |