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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G071000.1.p | ||||||||
Common Name | GLYMA_12G071000, LOC100783513 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARF | ||||||||
Protein Properties | Length: 793aa MW: 87731.7 Da PI: 6.3946 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.9 | 4.6e-24 | 166 | 267 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F Glyma.12G071000.1.p 166 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL- 253 99****************************963.3445679************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + +++el+++++r+ Glyma.12G071000.1.p 254 -RGENGELRLGIRRA 267 .4499999****996 PP | |||||||
2 | Auxin_resp | 115.4 | 5e-38 | 292 | 374 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 +a+a+stks F+v+Y+Pras+++Fvv+++k++k++k++vs+G+Rfkm+fe+++s+err+ sGt +++sdldp+rW +SkWr+L Glyma.12G071000.1.p 292 VANAISTKSKFHVFYSPRASHADFVVPYQKYVKSIKNPVSIGTRFKMRFEMDESQERRCsSGTLIATSDLDPYRWAKSKWRCL 374 689********************************************************9**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-41 | 157 | 279 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.44E-44 | 158 | 277 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.59E-23 | 164 | 266 | No hit | No description |
PROSITE profile | PS50863 | 13.084 | 166 | 268 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-24 | 166 | 268 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.8E-22 | 166 | 267 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.2E-32 | 292 | 374 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 21.699 | 664 | 748 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 4.32E-10 | 667 | 743 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 793 aa Download sequence Send to blast |
MEIDLNHEVT EAEKNAFCDR ECEKGAGAGA GITCWSSSTC SSSSAACVSS SYLELWHACA 60 GPLTSLLKKG NVVVYFPQGH LEQVASFSPF TPLEIPTYDL QPQIFCRVVN VQLLANKEND 120 EVYTQVTLLP QPELEGMYSE GKELEELGAE EDGDERSPTK STPHMFCKTL TASDTSTHGG 180 FSVPRRAAED CFPPLDYKQQ RPSQELVAKD LHGVEWKFRH IYRGQPRRHL LTTGWSIFVS 240 QKNLVSGDAV LFLRGENGEL RLGIRRAVRP RNDLPESVIG SQNCYSNVLS SVANAISTKS 300 KFHVFYSPRA SHADFVVPYQ KYVKSIKNPV SIGTRFKMRF EMDESQERRC SSGTLIATSD 360 LDPYRWAKSK WRCLMVRWDE DIETNHQDRV SPWEIDPSAP LPPLSIQSSP RLKKLRTGLQ 420 VASPSHLITA ARGSGLVGFE ESVRSPKVLQ GQENAGFVSF YYGCDTVTKP PGFEMSSPSH 480 PNLGSAEVRK VSSSELNSVH PFSYAGFVET NRFPRVLQGQ EICSLKSLTG KVDLNLGAWG 540 MPNLSCTTFN LHQATKPNFQ PSLFPYGDIH QAGQASLFCS KSTTFQRENV PFNKPSTQAG 600 IIVNEVGRSD LPNEHKLQDN ISSAANMGVS NDNNVQGKVN ACKLFGFSLS GETTAQNLQN 660 SAKRSCTKVH KQGSLVGRAI DLSRLSGYND LLSELERLFS MEGLLKDPDK GWRILYTDSE 720 NDIMVVGDDP WHEFCDVVSK IHIYTQEEVE KMTIGMISDD THSCLEEAPV IMEASKSSSV 780 GQPDYSPTAV RV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-119 | 36 | 397 | 2 | 354 | Auxin response factor 1 |
4ldw_A | 1e-119 | 36 | 397 | 2 | 354 | Auxin response factor 1 |
4ldw_B | 1e-119 | 36 | 397 | 2 | 354 | Auxin response factor 1 |
4ldy_A | 1e-119 | 36 | 397 | 2 | 354 | Auxin response factor 1 |
4ldy_B | 1e-119 | 36 | 397 | 2 | 354 | Auxin response factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G071000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006592219.1 | 0.0 | auxin response factor 4 isoform X1 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | I1LQY7 | 0.0 | I1LQY7_SOYBN; Auxin response factor | ||||
STRING | GLYMA12G07560.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5236 | 32 | 52 | Representative plant | OGRP10049 | 8 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G071000.1.p |
Entrez Gene | 100783513 |