PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G066000.2.p
Common NameGLYMA_12G066000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 195aa    MW: 22136.5 Da    PI: 5.0685
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G066000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.56.3e-132341448
                         HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         d++ ++G++ W++Iar+++ gRt++++k++w++++
  Glyma.12G066000.2.p  2 DLHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 34
                         899******.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.51138IPR017930Myb domain
SuperFamilySSF466891.64E-9239IPR009057Homeodomain-like
SMARTSM007170.0062236IPR001005SANT/Myb domain
PfamPF002492.8E-10233IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-15235IPR009057Homeodomain-like
CDDcd001677.58E-8234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MDLHSKWGNR WSRIARKLPG RTDNEIKNYW RTHMRKKKAL EKKHASASAS SPVSSSCQSS  60
LSSNNHVVDS HASKESFYDT GGYDDMMMGL IGGEKGYSMD DIWKDIVLSG EENSIYNNNN  120
LQPVYEEGHS EEGCNFSCPP PMMIMPSPPS WDQYNISSQP LWVMDEEESN KMLFPTLSDQ  180
YFSHYEQGNE FLTG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.283090.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G066000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0972740.0BT097274.1 Soybean clone JCVI-FLGm-21F20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001341817.11e-144MYB transcription factor MYB145 isoform 2
RefseqXP_006592208.11e-143MYB transcription factor MYB145 isoform X1
RefseqXP_028194944.11e-144transcription factor MYB59-like isoform X1
RefseqXP_028194945.11e-144transcription factor MYB59-like isoform X2
TrEMBLA0A0R0H2R51e-142A0A0R0H2R5_SOYBN; Uncharacterized protein
TrEMBLA0A445HM001e-143A0A445HM00_GLYSO; Transcription factor MYB59 isoform A
TrEMBLI1LQT61e-143I1LQT6_SOYBN; Uncharacterized protein
STRINGGLYMA12G07110.31e-142(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.14e-26myb domain protein 59