PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G059500.1.p
Common NameGLYMA_12G059500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 165aa    MW: 18427.7 Da    PI: 5.9231
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G059500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.7e-053153123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C + Fs+   L  H++ H
  Glyma.12G059500.1.p 31 YECNFCRRGFSNAQALGGHMNIH 53
                         99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-52457IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.99E-72858No hitNo description
PROSITE profilePS5015711.5933158IPR007087Zinc finger, C2H2
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MESDHHHEAA SDNHPSDGEE QGASHVTSRS YECNFCRRGF SNAQALGGHM NIHRKDKAKL  60
KQQQSSNQIQ QDPAKSGGEE SNKPNWNWNV SPQEHVIHKR HQLPLFAETP TSSETQKPQG  120
QTQTTTEQTL LSTHQDSSSE LDLELRLGPE PQDSSAETDT RNFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G059500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0925910.0BT092591.1 Soybean clone JCVI-FLGm-11E20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236477.21e-119uncharacterized protein LOC100527724
RefseqXP_028192899.11e-119transcriptional regulator TAC1-like
TrEMBLA0A445HLB31e-118A0A445HLB3_GLYSO; Transcriptional regulator TAC1
TrEMBLI1LQL51e-118I1LQL5_SOYBN; Uncharacterized protein
STRINGGLYMA12G06340.11e-119(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Representative plantOGRP19981133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.13e-15C2H2 family protein