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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G057900.1.p | ||||||||
Common Name | GLYMA_12G057900, LOC100786151 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 337aa MW: 37602.6 Da PI: 5.0682 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.7 | 6.3e-14 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l ++ G g+W+ +ar g+ R++k+c++rw +yl Glyma.12G057900.1.p 22 KGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYL 69 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.8e-16 | 75 | 118 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+el+++++ +lG++ W+ Ia++++ gRt++++k++w++ Glyma.12G057900.1.p 75 RGAFSQQEEELIIHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 118 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.089 | 17 | 69 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-23 | 17 | 72 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.3E-27 | 20 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-9 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-12 | 22 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.74E-8 | 25 | 69 | No hit | No description |
PROSITE profile | PS51294 | 25.723 | 70 | 124 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-26 | 73 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-16 | 74 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-15 | 75 | 118 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.55E-11 | 77 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MRKPEVSGNN NNNNNINNKL RKGLWSPEED DKLMNYMLNS GQGCWSDVAR NAGLQRCGKS 60 CRLRWINYLR PDLKRGAFSQ QEEELIIHLH SLLGNRWSQI AARLPGRTDN EIKNFWNSTI 120 KKRLKNMSSN TSPNGSESSY EPNNRDLNMA GFTTSNTQDQ QHADFMPMFN SSSQSPSMHA 180 MVLNSIIDRL PMLEHGLNMP CSGGFFNSTG PCFSSSQSGV DNKGIYLENG GVFGSVNIGA 240 EGDVYVPPLE SVSTTSDHNL KVESTCNTDT NNSYFDDINS ILLNNCNINS NNKRAENRAG 300 GVENLFQEEL TIGEWDLEEL MKDVSSFPFL DFSNIQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-28 | 16 | 124 | 21 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.4757 | 1e-116 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G057900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003539482.1 | 0.0 | transcription factor MYB46 | ||||
Refseq | XP_028193470.1 | 0.0 | transcription factor MYB46-like | ||||
TrEMBL | A0A0R4J4P2 | 0.0 | A0A0R4J4P2_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445HLK8 | 0.0 | A0A445HLK8_GLYSO; Transcription factor MYB83 | ||||
STRING | GLYMA12G06180.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF774 | 34 | 128 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12870.1 | 8e-64 | myb domain protein 46 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G057900.1.p |
Entrez Gene | 100786151 |