PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G049900.1.p
Common NameGLYMA_12G049900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 287aa    MW: 33486.9 Da    PI: 6.5043
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G049900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.91e-142771897
                         --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                         +p+ f++  +++ + + +++l++ s r W vk   r   ++ ++ +GW+ F ++n L + Df+vFk+++r+ef  vv ++
  Glyma.12G049900.1.p  2 IPNAFVRLPQLQGRIPEDVILRNASERAWHVKT--RYVEEKLYFDDGWRAFHQENCLGQADFLVFKHERRNEF--VVLIL 77
                         899999766888889999***************..777778*************************9988888..88776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.93180IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-15279IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-12278IPR015300DNA-binding pseudobarrel domain
CDDcd100171.75E-13277No hitNo description
PfamPF023621.4E-11277IPR003340B3 DNA binding domain
SuperFamilySSF1019367.06E-8160282IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-6161283IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
LIPNAFVRLP QLQGRIPEDV ILRNASERAW HVKTRYVEEK LYFDDGWRAF HQENCLGQAD  60
FLVFKHERRN EFVVLILQLS TQCQKPLVKM EEEQAATQLV EEPDSSSDDD DEESGEEFGA  120
GFNLQSHHRR ACKRETASSS NPNAEDPLPQ YVFDPEICIH PENHFFKAKL YRTRPNELHI  180
PGNAIQEFSL TLPEKITLIC CQPCQRKDIP MNELGDYHHN LTPIRIKYQE VTGIVCRWQD  240
HRIYIKGWAS FCRRNKIERN DTCFCEVISG EDQVVKTLRV HVARRR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.227800.0seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G049900.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0984200.0BT098420.1 Soybean clone JCVI-FLGm-16J3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025980369.10.0LOW QUALITY PROTEIN: B3 domain-containing protein REM20
RefseqXP_028195081.10.0B3 domain-containing protein REM20-like
TrEMBLA0A0R0H1L20.0A0A0R0H1L2_SOYBN; Uncharacterized protein (Fragment)
STRINGGLYMA12G05371.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128521124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.19e-15B3 family protein