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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G049900.1.p | ||||||||
Common Name | GLYMA_12G049900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 287aa MW: 33486.9 Da PI: 6.5043 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.9 | 1e-14 | 2 | 77 | 18 | 97 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +p+ f++ +++ + + +++l++ s r W vk r ++ ++ +GW+ F ++n L + Df+vFk+++r+ef vv ++ Glyma.12G049900.1.p 2 IPNAFVRLPQLQGRIPEDVILRNASERAWHVKT--RYVEEKLYFDDGWRAFHQENCLGQADFLVFKHERRNEF--VVLIL 77 899999766888889999***************..777778*************************9988888..88776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.93 | 1 | 80 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-15 | 2 | 79 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.1E-12 | 2 | 78 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.75E-13 | 2 | 77 | No hit | No description |
Pfam | PF02362 | 1.4E-11 | 2 | 77 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.06E-8 | 160 | 282 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-6 | 161 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
LIPNAFVRLP QLQGRIPEDV ILRNASERAW HVKTRYVEEK LYFDDGWRAF HQENCLGQAD 60 FLVFKHERRN EFVVLILQLS TQCQKPLVKM EEEQAATQLV EEPDSSSDDD DEESGEEFGA 120 GFNLQSHHRR ACKRETASSS NPNAEDPLPQ YVFDPEICIH PENHFFKAKL YRTRPNELHI 180 PGNAIQEFSL TLPEKITLIC CQPCQRKDIP MNELGDYHHN LTPIRIKYQE VTGIVCRWQD 240 HRIYIKGWAS FCRRNKIERN DTCFCEVISG EDQVVKTLRV HVARRR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.22780 | 0.0 | seed coat |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G049900.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098420 | 0.0 | BT098420.1 Soybean clone JCVI-FLGm-16J3 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025980369.1 | 0.0 | LOW QUALITY PROTEIN: B3 domain-containing protein REM20 | ||||
Refseq | XP_028195081.1 | 0.0 | B3 domain-containing protein REM20-like | ||||
TrEMBL | A0A0R0H1L2 | 0.0 | A0A0R0H1L2_SOYBN; Uncharacterized protein (Fragment) | ||||
STRING | GLYMA12G05371.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12852 | 11 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06160.1 | 9e-15 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G049900.1.p |