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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.12G048600.1.p |
Common Name | GLYMA_12G048600, LOC100813285 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
B3 |
Protein Properties |
Length: 442aa MW: 50118.1 Da PI: 9.4879 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.12G048600.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 59.4 | 6.3e-19 | 6 | 96 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
f k l+ps v +++l+lp +f++++gg+ +tl ++g +W+v l +k +++y++ +GWkeFvk + g +vFk++g+s+f
Glyma.12G048600.1.p 6 FHKLLLPSTVQPNQQLRLPDNFMRKYGGE--LLPIVTLSVPDGSVWRVGL--KKADNKYWFLDGWKEFVKHYSISIGYLLVFKYEGKSSF-- 91
899***********************877..44599**************..*********************************99999.. PP
EEEEE CS
B3 93 vvkvf 97
v++f
Glyma.12G048600.1.p 92 SVHIF 96
88887 PP
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2 | B3 | 56.5 | 5.1e-18 | 305 | 395 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
vl ps+ + ++++lp fae+h +g++ ++l+ ++gr+W v++ yr+++ l++GW eF +n+L egD++vF+l + +e l
Glyma.12G048600.1.p 305 VLRPSYLYRGCIMYLPSCFAEKHlNGVSG---FIKLQISNGRQWPVRCLYRGGR--AKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVL 389
78899******************877743...59**************665555..66***********************998889989 PP
EEEEE- CS
B3 93 vvkvfr 98
v+vfr
Glyma.12G048600.1.p 390 QVTVFR 395
999998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 442 aa
Download sequence Send
to blast |
MPHPSFHKLL LPSTVQPNQQ LRLPDNFMRK YGGELLPIVT LSVPDGSVWR VGLKKADNKY 60 WFLDGWKEFV KHYSISIGYL LVFKYEGKSS FSVHIFNLAT SEINYQSATR SSNEGLHFTN 120 RLKLFEEIED EDSIEISDSS PSHLAPSSLQ NQALTGSVDK MMPGKSYTPP ALQNLFNGSK 180 LNSINWGEGG NAHSSRIANS LDNRLTRDIG LQFNAVEFKR STEELKLRAS MEERMKKTTR 240 KKRKSVCASA DGQDPSAEHE EEVEMRLRFY ESASARKRTV TAEERERAIN AAKAFEPPNP 300 FCRVVLRPSY LYRGCIMYLP SCFAEKHLNG VSGFIKLQIS NGRQWPVRCL YRGGRAKLSQ 360 GWFEFSLENN LGEGDVCVFE LLRMKEVVLQ VTVFRVIEDV GLLSPPLQQN QNMSSAKMLN 420 TPLQQHLTST KMVRNQQQVH S*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4i1k_A | 1e-72 | 268 | 400 | 15 | 146 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-72 | 268 | 400 | 15 | 146 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}. |
Functional Description ? help
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Source |
Description |
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU857413 | 0.0 | EU857413.1 Glycine max reduced vernalization response 1 (VRN1) gene, complete cds. |