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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G048500.2.p | ||||||||
Common Name | GLYMA_12G048500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 233aa MW: 26939.5 Da PI: 5.8647 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.3 | 1.4e-18 | 11 | 101 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffkv++p s r+ +p+ f++ +++ + + +++l++ sgr+W vk r +++ ++ +GW+ F ++n L + Df+vFkl++r+ef Glyma.12G048500.2.p 11 FFKVFLP--ERHSERMLIPNAFVRLPQLQGRIPEDVILRNASGRVWHVKT--RYVGEKLYFDDGWRAFHQENCLGQADFLVFKLERRNEF 96 8899955..5555679*******77788888999****************..777778**************************998998 PP ..EEEEE CS B3 91 elvvkvf 97 vv ++ Glyma.12G048500.2.p 97 --VVLIL 101 ..88776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.3E-21 | 6 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.65E-19 | 7 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.72E-19 | 9 | 101 | No hit | No description |
PROSITE profile | PS50863 | 13.422 | 9 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.7E-16 | 11 | 101 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.3E-14 | 11 | 104 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MSTGAQRYPD FFKVFLPERH SERMLIPNAF VRLPQLQGRI PEDVILRNAS GRVWHVKTRY 60 VGEKLYFDDG WRAFHQENCL GQADFLVFKL ERRNEFVVLI LQLSTQCQKP LVKMEEEQAA 120 TQLVEEPDSS SDDDDEESGE EFSAGFNLQS HHRRACKRET ASSSNPNAED PLPEYVFDPQ 180 MCIHPENHFF KAKLYRTRPN ELHIPGNAIQ EFSLTLPEKI TLICCQPCQR KV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.22780 | 0.0 | seed coat |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G048500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098420 | 0.0 | BT098420.1 Soybean clone JCVI-FLGm-16J3 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541119.2 | 1e-173 | B3 domain-containing protein REM20 isoform X1 | ||||
Refseq | XP_028194627.1 | 1e-173 | B3 domain-containing protein REM20-like isoform X1 | ||||
Refseq | XP_028194628.1 | 1e-173 | B3 domain-containing protein REM20-like isoform X1 | ||||
TrEMBL | A0A0R0HAW6 | 1e-173 | A0A0R0HAW6_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445HL33 | 1e-173 | A0A445HL33_GLYSO; Putative B3 domain-containing protein isoform A | ||||
STRING | GLYMA12G05241.1 | 1e-172 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 7e-13 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G048500.2.p |