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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G048500.1.p | ||||||||
Common Name | GLYMA_12G048500, LOC100810594 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 311aa MW: 36350.2 Da PI: 7.0973 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.5 | 2.5e-18 | 11 | 101 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffkv++p s r+ +p+ f++ +++ + + +++l++ sgr+W vk r +++ ++ +GW+ F ++n L + Df+vFkl++r+ef Glyma.12G048500.1.p 11 FFKVFLP--ERHSERMLIPNAFVRLPQLQGRIPEDVILRNASGRVWHVKT--RYVGEKLYFDDGWRAFHQENCLGQADFLVFKLERRNEF 96 8899955..5555679*******77788888999****************..777778**************************998988 PP ..EEEEE CS B3 91 elvvkvf 97 vv ++ Glyma.12G048500.1.p 97 --VVLIL 101 ..88776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-20 | 6 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.43E-18 | 7 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.20E-18 | 9 | 101 | No hit | No description |
PROSITE profile | PS50863 | 13.422 | 9 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-15 | 11 | 101 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.3E-14 | 11 | 104 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.9E-8 | 184 | 306 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.6E-7 | 185 | 307 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MSTGAQRYPD FFKVFLPERH SERMLIPNAF VRLPQLQGRI PEDVILRNAS GRVWHVKTRY 60 VGEKLYFDDG WRAFHQENCL GQADFLVFKL ERRNEFVVLI LQLSTQCQKP LVKMEEEQAA 120 TQLVEEPDSS SDDDDEESGE EFSAGFNLQS HHRRACKRET ASSSNPNAED PLPEYVFDPQ 180 MCIHPENHFF KAKLYRTRPN ELHIPGNAIQ EFSLTLPEKI TLICCQPCQR KDIPMNELGD 240 YHHNLTPIRI KYQEVTGRVC RWQDHRIYIK GWASFCRRNK IERNDTCFCE VISGEDQVVK 300 TLRVHVARRR * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.22780 | 0.0 | seed coat |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G048500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098420 | 0.0 | BT098420.1 Soybean clone JCVI-FLGm-16J3 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541119.2 | 0.0 | B3 domain-containing protein REM20 isoform X1 | ||||
Refseq | XP_028194627.1 | 0.0 | B3 domain-containing protein REM20-like isoform X1 | ||||
Refseq | XP_028194628.1 | 0.0 | B3 domain-containing protein REM20-like isoform X1 | ||||
TrEMBL | K7LT28 | 0.0 | K7LT28_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G05241.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12852 | 11 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06160.1 | 1e-22 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G048500.1.p |
Entrez Gene | 100810594 |